TCONS_00020544-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00020544-protein
Unique Name	TCONS_00020544-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	588

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00020544-protein ID=TCONS_00020544-protein|Name=TCONS_00020544-protein|organism=Clytia hemisphaerica|type=polypeptide|length=588bp
MMSARQFLVRQCLARVHQCRYTSSTTSSTPIKRYSSMLELGVMKTDQSQF
AAMLQLQKLFNNIKSYNPDQLSKDSNQPRGLYLHGGVGTGKTMLLDIFYD
NVPTEKKKRVHFNAFMLYLYSEINRWNLCCDENVDHTSPVEHIANKIMQD
TWLLCFDEIQISDYASFTLLEGVLGYMISQGAVIVGTSNRSPEELSNSSI
SGENDEVEVKKPSSFYSLFAENCDIHHVESERDHRMEMHEGECRFLYPVA
PENKKQLDMMFAKLIEPGQRISSEFLEIYNRKILIPVACGEVARFHFKEL
FMRPYGPADYIKICNEYSHIFIDEIPRMTINQKNEARRLLTFIDAAYETR
AKIYCTAESTAEDLFMMLPRNDENYEVEQMHLEMIGEIAYDLKLAGLDFK
SLNLISGEDEIFSFKRAISRLNEMQSEFYQSTEYRKQLFVPYIGTEAEKM
NAEEKRRTREKMRLQKQAKEQDAQNETQTEEDWSIPNRDYKETDWGDEET
HRRTKDAERSMERYMDVLNVEWTWFGCFGTTGQEKENHGNLIVKNGHFLL
IFINNNDTNSLKTRRNESYHFAGITWFIQTTRCRGTGC

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_011535	XLOC_011535	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00020544	TCONS_00020544	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005654	ATPase_AFG1-like
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 447..481
None	No IPR available	GENE3D	3.40.50.300		coord: 208..384 e-value: 0.056 score: 12.2
None	No IPR available	GENE3D	3.40.50.300		coord: 33..205 e-value: 4.9E-9 score: 35.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 451..503
IPR005654	ATPase, AFG1-like	PFAM	PF03969	AFG1_ATPase	coord: 29..365 e-value: 7.1E-70 score: 235.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 58..198

Blast

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BLAST of TCONS_00020544-protein vs. Swiss-Prot (Human)
Match: AFG1L (AFG1-like ATPase OS=Homo sapiens GN=AFG1L PE=1 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 9.705e-65
Identity = 132/413 (31.96%), Postives = 220/413 (53.27%), Query Frame = 0

Query:   30 PIKRYSSMLELGVMKTDQSQFAAMLQLQKLFNNIKSYNPD------QLSKDSNQPRGLYLHGGVGTGKTMLLDIFYDNVPTEKKKRVHFNAFMLYLYSEINRWNLCCDEN-----VDHTSPVEHIANKIMQDTWLLCFDEIQISDYASFTLLEGVLGYMISQGAVIVGTSNRSPEELSNSSISGENDEVEVKKPSSFYSLFAENCDIHHVESERDHRMEMHEGECRFLYPVAPEN-KKQLDMMFAKLIEPGQRIS-SEFLEIYNRKILIPVACGEVARFHFKELFMRPYGPADYIKICNEYSHIFIDEIPRMTINQKNEARRLLTFIDAAYETRAKIYCTAESTAEDLFMMLPRNDENYEVEQMHLEMIGEIAYDLKLAGLDFKSLNLISGEDEIFSFKRAISRLNEMQSEFY 429
            P+  Y  +++   +K D+ Q   +  LQKL  ++K YN +      +L   S  PRGLY++G VGTGKTM++D+FY  V  ++KKRVHF+ FML ++  I+R      +           P+  IA +I ++  LLCFDE Q++D A   +L+ +   +   G V+V TSNR PE+L  + +   N          F ++  E C+   ++S  D+R        +  Y  +  + +  +D +F +L +    ++    L++  R++ +  ACG VA   F+EL  RP G +DY+++   +  IF+  IP+ T+  + + RR +T ID  Y+ + +I C+A +    LF+       + E+EQ  + M      DL L+    + L++ +GE+EIF+F+R ISRL EMQ+E Y
Sbjct:   75 PLDHYDFLIKAHELKDDEHQRRVIQCLQKLHEDLKGYNIEAEGLFSKLFSRSKPPRGLYVYGDVGTGKTMVMDMFYAYVEMKRKKRVHFHGFMLDVHKRIHRLKQSLPKRKPGFMAKSYDPIAPIAEEISEEACLLCFDEFQVTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANF-------VPFIAVLKEYCNTVQLDSGIDYRKRELPAAGKLYYLTSEADVEAVMDKLFDELAQKQNDLTRPRILKVQGRELRLNKACGTVADCTFEELCERPLGASDYLELSKNFDTIFLRNIPQFTLANRTQGRRFITLIDNFYDLKVRIICSASTPISSLFL---HQHHDSELEQSRILMD-----DLGLSQDSAEGLSMFTGEEEIFAFQRTISRLTEMQTEQY 472

The following BLAST results are available for this feature:

BLAST of TCONS_00020544-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00020544-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AFG1L	9.705e-65	31.96	AFG1-like ATPase OS=Homo sapiens GN=AFG1L PE=1 SV=...	[more]

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TCONS_00020544-protein (polypeptide) - C. hemisphaerica