TCONS_00020541-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020541-protein
Unique NameTCONS_00020541-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length103

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020541-protein ID=TCONS_00020541-protein|Name=TCONS_00020541-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MLFYSFFKSLVGKEVIVELKNDLSISGVLDSVDQYLNIKLTDISVTDPDR
YPHMLSVKNCFLRGSVVRYVQLPPEDIDVQLLQDAARKESEQQRKQKETK
DKD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011532XLOC_011532Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020541TCONS_00020541Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR016654U6_snRNA_Lsm2
IPR010920LSM_dom
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..72
e-value: 4.7E-17
score: 72.7
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 6..71
e-value: 4.8E-16
score: 58.1
IPR016654U6 snRNA-associated Sm-like protein LSm2PIRSFPIRSF016394Lsm2coord: 1..95
e-value: 6.6E-51
score: 167.7
IPR016654U6 snRNA-associated Sm-like protein LSm2CDDcd01725LSm2coord: 2..89
e-value: 2.35804E-57
score: 173.158
NoneNo IPR availableGENE3D2.30.30.100coord: 3..103
e-value: 2.4E-19
score: 68.7
IPR010920LSM domainSUPERFAMILY50182Sm-like ribonucleoproteinscoord: 3..99

Blast
[Close]
BLAST of TCONS_00020541-protein vs. Swiss-Prot (Human)
Match: LSM2 (U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens GN=LSM2 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 9.107e-56
Identity = 78/95 (82.11%), Postives = 89/95 (93.68%), Query Frame = 0 
Query:    1 MLFYSFFKSLVGKEVIVELKNDLSISGVLDSVDQYLNIKLTDISVTDPDRYPHMLSVKNCFLRGSVVRYVQLPPEDIDVQLLQDAARKESEQQRK 95
            MLFYSFFKSLVGK+V+VELKNDLSI G L SVDQYLNIKLTDISVTDP++YPHMLSVKNCF+RGSVVRYVQLP +++D QLLQDAARKE+ QQ++
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEALQQKQ 95
The following BLAST results are available for this feature:
BLAST of TCONS_00020541-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LSM29.107e-5682.11U6 snRNA-associated Sm-like protein LSm2 OS=Homo s... [more]
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