TCONS_00020451-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020451-protein
Unique NameTCONS_00020451-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length505

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020451-protein ID=TCONS_00020451-protein|Name=TCONS_00020451-protein|organism=Clytia hemisphaerica|type=polypeptide|length=505bp
MFLKSSISSSQVAHRHYSLRGTSSKGESYSQHRVIKRTKTGSIHTTSILE
EGCPHGTLVSKSFDETDENYSLLNYLGDSIVSAGDNASPRFPRRLRVPTL
SSLPSVRSSILSLGTTIGDQKRINIIVQGKLYQTFEETLDRHSTTLLGTK
NDRDVFYDPVRKAYVFEDHCHRSFDAILFYYQSNGILSRPSDVTRMHFIE
ELEFFRITKFMDNRQEQDAYHLKELMKEKIVEEPKLFREKAWMLFRHQNE
SCLGRLWTLFHLIITIISVLIICTKTLPIGINPTHVFLADFTINMIYTLE
LGGLLLFTPNIKQYFLSIVGFMDIVTSVSYYFFFFFFIFGVWQYTLNRIC
NFFLTFRIFKMFKFCESARYILYTLTETRYYLQLFATSATIIFFWFAILI
YLVENGFRNGPVNEHPASINSIGDGVWYIIITCTGVGYGDMYPMTLPGKI
LGCAFCLLGLLLFCLPTSVLMNKFIDFYFLAEAYDKEEEGRAKILEAREN
LMDGK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011494XLOC_011494Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020451TCONS_00020451Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028325VG_K_chnl
IPR000210BTB/POZ_dom
IPR005821Ion_trans_dom
IPR003131T1-type_BTB
IPR011333SKP1/BTB/POZ
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
GO:0051260protein homooligomerization
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005515protein binding
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0051260 protein homooligomerization
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005515 protein binding
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028325Voltage-gated potassium channelPRINTSPR00169KCHANNELcoord: 314..334
score: 21.11
coord: 381..404
score: 24.05
coord: 164..183
score: 39.33
coord: 248..276
score: 18.84
coord: 352..378
score: 24.74
coord: 448..474
score: 36.16
coord: 419..441
score: 48.99
IPR000210BTB/POZ domainSMARTSM00225BTB_4coord: 121..222
e-value: 0.0062
score: 25.8
NoneNo IPR availableGENE3D1.20.5.110coord: 440..476
e-value: 3.3E-9
score: 35.7
NoneNo IPR availableGENE3D3.30.710.10coord: 120..222
e-value: 1.2E-11
score: 44.1
NoneNo IPR availableGENE3D1.20.120.350coord: 252..378
e-value: 3.1E-6
score: 26.4
NoneNo IPR availableGENE3D1.10.287.70coord: 379..438
e-value: 6.8E-7
score: 28.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 254..474
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 256..476
e-value: 1.3E-12
score: 47.4
IPR003131Potassium channel tetramerisation-type BTB domainPFAMPF02214BTB_2coord: 123..210
e-value: 6.1E-13
score: 48.8
IPR011333SKP1/BTB/POZ domainSUPERFAMILY54695POZ domaincoord: 121..222

Blast
[Close]
BLAST of TCONS_00020451-protein vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.618e-40
Identity = 117/407 (28.75%), Postives = 200/407 (49.14%), Query Frame = 0 
Query:  121 KRINIIVQGKLYQTFEETLDRHSTTLLGTKNDRDVFYDPVRKAYVFEDHCHRSFDAILFYYQSNGILSRPSDVTRMHFIEELEFFRITKFMDNRQEQDAYHLKELMKEKIVEEPKLFREKAWMLFRHQNESCLGRLWTLFHLIITIISVLIICTKTLP--------IGI-----NPTHVFLADFTINMIYTLELGGLLLFT----------PNIKQYFLSIVGFMDIVTSVSYYFFFFFFIF-------GVWQYTLN--RICNFFLTFRIFKMFKFCESARYILYTLTETRYYLQLFATSATIIFFWFAILIYLVENGFRNGPVNEHPASINSIGDGVWYIIITCTGVGYGDMYPMTLPGKILGCAFCLLGLLLFCLPTSVLMNKFIDFYFLAEAYDKEEEGRAKIL 495
            +R+ I + G  ++T  +TL +   TLLG    R  ++DP+R  Y F D    SFDAIL+YYQS G L RP +V    F EE++F+ + +    +  +D   +KE  +E+ + E K ++ + W+LF +   S   R+  +  +++ +IS++I C +TLP         G      N T ++ ++   +  + +E   ++ F+          P+   +F +I+ F+DIV  + Y+      I        G    +L   R+      FRIFK+ +  +  + +  TL  +   L L      +IFF F I + L  +        E  +  +SI D  W+ +++ T VGYGDMYP+T+ GKI+G    + G+L   LP  V+++ F  FY      + E E +A++L
Sbjct:   37 ERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKE--EERPLPE-KEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGL------LIFFLF-IGVILFSSAVYFAEAEEAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH----RETEGEEQAQLL 428
The following BLAST results are available for this feature:
BLAST of TCONS_00020451-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNA12.618e-4028.75Potassium voltage-gated channel subfamily A member... [more]
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