TCONS_00020368-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00020368-protein
Unique Name	TCONS_00020368-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	427

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00020368-protein ID=TCONS_00020368-protein|Name=TCONS_00020368-protein|organism=Clytia hemisphaerica|type=polypeptide|length=427bp
MIIDMGSLLLLAEKTENDIRSCLNTLQFVKQQGKELKQDDIKKLDVGQKD
MKKGVRTIIQGVFQLPRVNRKKLIGDMNNRGVNVKTGASARFHHMLHTVS
GNTDYEKTMQGLFDQYLHCKTKDPYLESITKGGDWLCFADLVQERVQHDQ
SFVLRKYSVFLPVAFHMFFAKATPFKLQYSNVSYENFVKTQTNKQTLQLM
LSGMSPYVRRHCLGRPTLLELVPYLFLMTAPNLRPVNTKLYSEMEKRMFV
SLVETMISYNLTFRQERNQDGQYTYILEPNIEELIAYSNMPQHKHLPYAT
KQLIAREIDLEKMRKHERNANALEQPNFQSKTAKGTESQQQQQAKKPQVS
AQTIVKRQKLIPKKIEKESTQLDFFGRVIKTPVKGQGGQGAGKEKEENSL
LSKTIRFRFNEGYTNAVRRKVKVKDFF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_011443	XLOC_011443	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00020368	TCONS_00020368	Clytia hemisphaerica	transcript

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 12..32
None	No IPR available	GENE3D	1.10.8.60		coord: 2..53 e-value: 2.2E-9 score: 36.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 318..353

Blast

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BLAST of TCONS_00020368-protein vs. Swiss-Prot (Human)
Match: CTF18 (Chromosome transmission fidelity protein 18 homolog OS=Homo sapiens GN=CHTF18 PE=1 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 2.765e-88
Identity = 168/451 (37.25%), Postives = 247/451 (54.77%), Query Frame = 0

Query:    1 MIIDMGSLLLLAEKTENDIRSCLNTLQFVKQQG-KELKQDDIKKLDVGQKDMKKGVRTIIQGVFQLPRVNRKK------------LIGDMNNRGVNVKTGASARFHHMLHTVSGNTDYEKTMQGLFDQYLHCKTKDPYLESITKGGDWLCFADLVQERVQHDQSFVLRKYSVFLPVAFHMFFAKATPFKLQYSNVSYENFVKTQTNKQTLQLMLSGMSPYVRRHCLGRPTLLELVPYLFLMTAPNLRPVNTKLYSEMEKRMFVSLVETMISYNLTFRQERNQDGQYTYILEPNIEELIAYSNMPQHKHLPYATKQLIAREIDLEKMRKHERNANALEQPNFQSKTAKGTESQQQQQAK-----KPQVSAQTIVKRQKLIPKKIEKESTQLDFFGRVI--KTPVKGQGGQGAGKEKEENSLLSKTIR----FRFNEGYTNAVRRKVKVKDFF 427
            M  D G L  L EKT+NDIR+C+NTLQF+  +G +EL   D++   VG KD ++G+ ++ Q VFQLPR  R++            L+GD +   +   T AS RF+ +LH  +   ++EK +QGLFD +L  + +D  L ++    DWL F DL+     H QSF L +Y  FLPVAFH+ FA +   ++ + +   E   +    +  +Q ++SG++P  R     +  LL+ +  L  + AP LRPV+T+LYS  EK+   SLV TM++Y+LT+RQER  DGQY Y LEPN+EEL  +  +P  K L Y TKQLIAREI++EKMR+ E +A     P                  K      P+   Q +   + ++ +   +E  + DFFGRV+   T V   G     ++  E  + +   R    FRFNEG +NAVRR + ++D  
Sbjct:  531 MRADPGVLAALCEKTDNDIRACINTLQFLYSRGQRELSVRDVQATRVGLKDQRRGLFSVWQEVFQLPRAQRRRVGQDPALPADTLLLGDGDAGSL---TSASQRFYRVLHAAASAGEHEKVVQGLFDNFLRLRLRDSSLGAVCVALDWLAFDDLLAGAAHHSQSFQLLRYPPFLPVAFHVLFASSHTPRITFPSSQQEAQNRMSQMRNLIQTLVSGIAPATRSRATPQALLLDALCLLLDILAPKLRPVSTQLYSTREKQQLASLVGTMLAYSLTYRQERTPDGQYIYRLEPNVEELCRFPELPARKPLTYQTKQLIAREIEVEKMRRAEASARVENSPQVDGSPPGLEGLLGGIGEKGVHRPAPRNHEQRL---EHIMRRAAREEQPEKDFFGRVVVRSTAVPSAGDTAPEQDSVERRMGTAVGRSEVWFRFNEGVSNAVRRSLYIRDLL 975

The following BLAST results are available for this feature:

BLAST of TCONS_00020368-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00020368-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CTF18	2.765e-88	37.25	Chromosome transmission fidelity protein 18 homolo...	[more]

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TCONS_00020368-protein (polypeptide) - C. hemisphaerica