TCONS_00020033-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020033-protein
Unique NameTCONS_00020033-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1117

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020033-protein ID=TCONS_00020033-protein|Name=TCONS_00020033-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1117bp
MKKFAGIRRIVDQLQTNTQTDGPTEPEPDINDRLTGDKFTLSKVARYGFP
YHPTCLAIDSVQKLLAIGTATGAIRICGRPGVECHVYHETNVSVTHLQFL
INEGGLVSVCNDASLHIWSLRQKQPALIQSLNFKKEKITAIHNPFLSKWL
YVGTERGNTYMVHVESFKVSGYVISWNHVIDVSCKTHPGPVTQIQSNPQD
SNKLLLNFESGVCVVWDLRSKKIFQSYSLEQSSQYVTCATWHMEGRQFMT
GHWDGSLSTWNYKNGKKPEEKQMPHATNKTGGNHNTTICCPILKLEWLAS
KQGELPITIFSGGMPYGNKNKGLTVMKGRSKSLLLSEQVIDFQCLLGSPW
PTEHPDPQALIVLLRNEIVIFDLVGPVSPAPSWFSLPYTFDIHESPVTCI
SFLPECPNDLVMALHLMVTQKENPNQSKRPWPLTGGQDGEIGQDPTIIIT
GHSDGTIKFWDATSNMLIPCHKVSIARLFDRTMSRQSSTTSNLSKTSSVE
HYDDPFAVQHLCFCPYSRLLSVVTTSFLIITFQFSNKENIIEAPRLEINF
SIETGVECNDSPTELLSNSFNDQSNLTKSSSDNRLAVSSAPVSYHPPFRS
VGVKWPIGFQPSLICKQVANEPMPNIISLAQSSSYGLIAFGSSIGVAVVD
YVRHCTVMVCMTDELGVQGEWTELSIPAAVKTPLHQTKSNPLSPNLSESR
DLFNGDISDRKKFHTDRRKGDHRNSKIDRKEEHSKLGKRTSLHSTSSWNG
KDTEDGQTLSPIVAPAAGSIQALMFGSTYTRKNGGVQCPSLWVGTSLGTV
ALVALSVPTQEQRLSQPVLSNCTGTVLNHNHCVLDITLMDRCGNIVMPPF
NFWRDKDSANPDANRTNISNLNVETNAKQHVAVTTEKQIKVRTLPTFKTL
HAVEPVIGDHFIVKADTMIVEGGNCISCLNTDGHIKIYSLPSLRPLLDVE
CGISLADYRMIRTFTVGKGGEATFLTTPTEIQRIAFTKEKEESFVDGYGC
LFKLCGLPEQRPKGFIESFFTSAPSSLDREELFGDKSGNSGSRVAEYIPG
RGMSHLQQQVENSNDVISRAKMALIERGEKLSVLEDKTAAMNENARSYAS
AAQALADKFQKKKWYQW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011260XLOC_011260Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020033TCONS_00020033Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000664Lethal2_giant
IPR001680WD40_repeat
IPR013577LLGL2
IPR013905Lgl_C_dom
IPR015943WD40/YVTN_repeat-like_dom
IPR001388Synaptobrevin
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000664Lethal(2) giant larvae proteinPRINTSPR00962LETHAL2GIANTcoord: 628..652
score: 30.86
coord: 355..375
score: 46.26
coord: 306..328
score: 32.92
coord: 33..51
score: 39.85
coord: 445..468
score: 48.21
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 383..461
e-value: 0.033
score: 23.4
coord: 222..261
e-value: 0.041
score: 23.0
coord: 177..217
e-value: 9.8
score: 10.7
coord: 80..119
e-value: 0.5
score: 18.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 229..270
score: 9.406
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 444..464
score: 8.637
IPR013577Lethal giant larvae homologue 2PFAMPF08366LLGLcoord: 284..375
e-value: 1.0E-15
score: 57.9
IPR013905Lethal giant larvae (Lgl)-like, C-terminal domainPFAMPF08596Lgl_Ccoord: 786..992
e-value: 4.7E-8
score: 32.0
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 12..291
e-value: 6.0E-31
score: 106.8
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 458..991
e-value: 2.3E-8
score: 33.0
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 354..457
e-value: 2.2E-6
score: 26.5
IPR001388SynaptobrevinPFAMPF00957Synaptobrevincoord: 1053..1110
e-value: 1.6E-7
score: 31.0
IPR001388SynaptobrevinPROSITEPS50892V_SNAREcoord: 1052..1116
score: 12.097
NoneNo IPR availableGENE3D1.20.5.110coord: 1052..1108
e-value: 3.8E-10
score: 39.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 685..759
NoneNo IPR availableCDDcd15873R-SNARE_STXBP5_6coord: 1050..1108
e-value: 1.92808E-16
score: 74.9856
NoneNo IPR availableSUPERFAMILY58038SNARE fusion complexcoord: 1053..1107
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 448..462
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 184..270
score: 12.446
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 445..547
coord: 361..405
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 42..274

Blast
BLAST of TCONS_00020033-protein vs. Swiss-Prot (Human)
Match: STB5L (Syntaxin-binding protein 5-like OS=Homo sapiens GN=STXBP5L PE=1 SV=2)

HSP 1 Score: 698.738 bits (1802), Expect = 0.000e+0
Identity = 419/1161 (36.09%), Postives = 647/1161 (55.73%), Query Frame = 0
Query:   29 DINDRLTGDKFTLSKVARYGFPYHPTCLAIDSVQKLLAIGTATGAIRICGRPGVECHVYHETNVSVTHLQFLINEGGLVSVCNDASLHIWSLRQKQPALIQSLNFKKEKITAIHNPFLSKWLYVGTERGNTYMVHVESFKVSGYVISWNHVIDVSCKTHPGPVTQIQSNPQDSNKLLLNFESGVCVVWDLRSKKIFQSYSLEQSSQYVTCATWHMEGRQFMTGHWDGSLSTWNYKNGKKPEEKQMPHATNKTGGNHNTTICCPILKLEWLASKQGELPITIFSGGMPYGN--KNKGLTVMKGRSKSLL-LSEQVIDFQCLLGSPWPTEHPDPQALIVLLRNEIVIFDLVGPVSPAPSWFSLPYTFDIHESPVTCISFLPECPNDLVMALHLMVTQKENPNQSKRPWPLTGGQDGEIGQD-PTIIITGHSDGTIKFWDATSNMLIPCHKVSIARLFDRTMSRQSSTTSNLSKTSSVEHYDDPFAVQHLCFCPYSRLLSVVTTSFLIITFQFSNKENIIEAPRLEINFSIETGVECNDSPTELLSNSFNDQSNLTKSS-----SDNRLAVSSAPVSYHPPF--RSVGVKWPIGFQPSLICKQ--VANEPMPNIISLAQSSSYGLIAFGSSIGVAVVDYVRHCTVMVCMTDEL----------------------------GVQGEWTELSIPAAVKT---PLHQTKSNPLSPNL----SESRDLFNGDISD--RKKFHTDRRKGDHRNSKIDR--------KEEHSKLGKRTSLHSTSSWNGKDTEDGQTLSPIVAPAAGSIQAL---MFGSTYTRKNGGVQCPSLWVGTSLGTVALVALSVP-TQEQRLSQPVLSNCTGTVLNHNHCVLDITLMDRCGNIVMPPFNFWRDKDSANPDANR--------TNISNLNVETNAKQHVAVTTEKQIKVRTLPTFKTLHAVEPVIGDHFIVKADTMIVEGGNCISCLNTDGHIKIYSLPSLRPLLDVECGISLADYRMIRTFTVGKGGEATFLTTPTEIQRIAFTKEKEESFVDGYGCLFKLCGLPEQRPKGFIESFFTSAPSSLDREELFGDKSGNSGSR-VAEYIPGRG-MSHLQQQVENSNDVISRAKMALIERGEKLSVLEDKTAAMNENARSYASAAQALADKFQKKKWYQW 1117
            +I + LT + F + K  R+GFP+ PT LA D VQK+LAIGT TGAIRI GRPGV+C+  HE+  +V  LQFLINEG LVS  +D +LH+W+LRQK+PA++ SL F +E+IT  H PF SKWLYVGTERGNT++V++ESF +SGYVI WN  I++S KTHPGPV  +  +P+D  KLL+ +E+G  V WDL+SK+       +++   +    WH EG+QFM  H DGSL+ WN K+  +P +  +PH  ++  G  + + C PILK+E+   K  E P  IFSGG+ Y    +   LT+M G++ ++L +   +++F  L  +P+P E  +P A++VLL  ++++ DL     P    F  PY  DIHESPVTC ++  +CP DL++ L+ +  + +    S + WP++GG      Q  P IIITGH+DG+IKFWDA++  L   +K+  +++F++    +   T  + +       +DPFA+Q + +CP SR+  V   S  +I ++FS  E   E   LE+   ++  VE   +P    S  F D S    SS     S N +A         P    ++  V+ P G+Q  L+ +   V  EP   I SLA SS+YG++AFG+  G+AVVD+++   ++   T +L                            G+   + +L+    ++T    L +   +P+   L    S + D  NG  +    +   + +R      SK++R        ++  S      SL  T+  N +++ +    S I +    S +A+    F  ++ RKN     P L+VGTSLG V +++L++P   EQR ++PV+   +GT L+    VL  + MDR G ++ PP+  WRD +  N D N          N S+ + E    Q+  + +EKQ KV +LP+   L+ V  +    FI++A+ +++    C++C   +GHI I SLPSLRP+LDV   + L D R+ RTF     G+A +L +PTEIQR+ +++E  ++  D  G LF     PE + +GF++  F  +  + DREELFG+ S    SR +A++IPG G +  ++         ++RA++AL ERG++L  LE+KTA M  +A +++  A  L  K++ KKWYQ+
Sbjct:   49 EIQETLTSEYFQICKTVRHGFPHQPTALAFDPVQKILAIGTRTGAIRILGRPGVDCYCQHESGAAVLQLQFLINEGALVSASSDDTLHLWNLRQKRPAILHSLKFNRERITYCHLPFQSKWLYVGTERGNTHIVNIESFILSGYVIMWNKAIELSTKTHPGPVVHLSDSPRDEGKLLIGYENGTVVFWDLKSKRAELRVYYDEAIHSI---DWHHEGKQFMCSHSDGSLTLWNLKSPSRPFQTTIPHGKSQREGRKSES-CKPILKVEYKTCKNSE-PFIIFSGGLSYDKACRRPSLTIMHGKAITVLEMDHPIVEFLTLCETPYPNEFQEPYAVVVLLEKDLIVVDLTQSNFPI---FENPYPMDIHESPVTCTAYFADCPPDLILVLYSIGVKHKKQGYSNKEWPISGGAWNLGAQTYPEIIITGHADGSIKFWDASAITLQMLYKLKTSKVFEKQKVGEGKQTCEIVE-------EDPFAIQMIYWCPESRIFCVSGVSAYVIIYKFSRHEITTEIVSLEVR--LQYDVEDIITPEPETSPPFPDLSAQLPSSRSLSGSTNTVASEGVTKDSIPCLNVKTRPVRMPPGYQAELVIQLVWVDGEPPQQITSLAVSSAYGIVAFGNCNGLAVVDFIQKTVLLSMGTIDLYRSSDLYQRQPRSPRKNKQFIADNFCMRGLSNFYPDLT--KRIRTSYQSLTELNDSPVPLELERCKSPTSDHVNGHCTSPTSQSCSSGKRLSSADVSKVNRWGPGRPPFRKAQSAACMEISLPVTTEENRENSYNRSRSSSISSIDKDSKEAITALYFMDSFARKNDSTISPCLFVGTSLGMVLIISLNLPLADEQRFTEPVMVLPSGTFLSLKGAVLTFSCMDRMGGLMQPPYEVWRDPN--NIDENEKSWRRKVVMNSSSASQEIGDHQYTIICSEKQAKVFSLPSQTCLY-VHNITETSFILQANVVVMCSSACLACFCANGHIMIMSLPSLRPMLDVNY-LPLTDMRIARTFCFTNEGQALYLVSPTEIQRLTYSQEMCDNLQDMLGDLFTPIETPEAQNRGFLKGLFGGSGQTFDREELFGEASAGKASRSLAQHIPGPGSIEGMKGAAGGVMGELTRARIALDERGQRLGELEEKTAGMMTSAEAFSKHAHELMLKYKDKKWYQF 1186          
The following BLAST results are available for this feature:
BLAST of TCONS_00020033-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STB5L0.000e+036.09Syntaxin-binding protein 5-like OS=Homo sapiens GN... [more]
back to top