TCONS_00019440-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019440-protein
Unique NameTCONS_00019440-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length224

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019440-protein ID=TCONS_00019440-protein|Name=TCONS_00019440-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
MHFGVKDVIRRVRTYSGSRSRSSSVGSNGSRGSRSSTNINIVNHGEMKIL
VMGSHDVGKTTICKTYVGLEDGDDDLCLHDHDIPYDTSVFIDGDNGDIQQ
YDLEIYDYDPDASPIKNRKLIGECDAFLLVYSITSKQSFLKLLEMKQDVS
HIKGAGNHPIMFAVGNKSDLMLDSERVIKDDDLWSLNMDQIDVSAKSNEG
IQTAFKTLTNECAKRKHNEKRPSQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010927XLOC_010927Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019440TCONS_00019440Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 47..68
score: 30.01
coord: 157..170
score: 40.09
coord: 190..212
score: 26.52
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 44..215
e-value: 6.9E-7
score: -12.5
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 47..215
e-value: 4.0E-4
score: -58.2
NoneNo IPR availableGENE3D3.40.50.300coord: 40..222
e-value: 1.7E-19
score: 69.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..38
NoneNo IPR availablePROSITEPS51419RABcoord: 41..224
score: 9.817
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 48..212
e-value: 2.5E-12
score: 46.6
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 46..219

Blast
[Close]
BLAST of TCONS_00019440-protein vs. Swiss-Prot (Human)
Match: RAD (GTP-binding protein RAD OS=Homo sapiens GN=RRAD PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.030e-16
Identity = 52/176 (29.55%), Postives = 91/176 (51.70%), Query Frame = 0 
Query:   48 KILVMGSHDVGKTTICKTYVGLEDGDD-DLCLHDHDIPYDTSVFIDGDNGDIQQYDLEIYDYDPDASPIKNRKLIGEC----DAFLLVYSITSKQSFLKLLEMKQDVSHIKGAGNHPIMFAVGNKSDLMLDSERVIKDDDLWSLNMDQ--IDVSAKSNEGIQTAFKTLTNECAKRK 216
            K+L++G+  VGK+ + + + G+EDG + +   H     YD S+ +DG+   +  YD  I++ D        R L G C    DA+++VYS+T K SF K  E++  +   +   + PI+  VGNKSDL+   E  + +    ++  D   I+ SA  +  +Q  F+ +  +   R+
Sbjct:   93 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHT----YDRSIVVDGEEASLMVYD--IWEQD------GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIIL-VGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRR 255
The following BLAST results are available for this feature:
BLAST of TCONS_00019440-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAD6.030e-1629.55GTP-binding protein RAD OS=Homo sapiens GN=RRAD PE... [more]
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