TCONS_00019320-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019320-protein
Unique NameTCONS_00019320-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length253

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019320-protein ID=TCONS_00019320-protein|Name=TCONS_00019320-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
MEGNGSTCTDINECLENPCSPLTKCENRLPGYVCHQCPSGYKGEQLVGIG
REHARLKKQVCIDIDECLVGTHKCDDNAICINKKGSYECGPCRSGYRKGI
DSNCVHLEICRGRPGSPSNPCSKYATCHPISGGALCKCRPSMAGDGYHCG
KDTDGDGIPDQQLQCDSKHCQKDNCMNTPNSGQSDLDDDGKGDACDTDLD
GDGIYNQVDNCPRHSNHDQSNSDNDKIGDACDNCLFTKNDHQQDVDGDGI
GDA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010854XLOC_010854Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019320TCONS_00019320Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001881EGF-like_Ca-bd_dom
IPR000742EGF-like_dom
IPR028974TSP_type-3_rpt
IPR003367Thrombospondin_3-like_rpt
IPR018097EGF_Ca-bd_CS
IPR017897Thrombospondin_3_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: Biological Process
TermDefinition
GO:0007155cell adhesion
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007155 cell adhesion
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001881EGF-like calcium-binding domainSMARTSM00179egfca_6coord: 10..62
e-value: 3.8E-7
score: 39.7
coord: 63..105
e-value: 2.0E-9
score: 47.3
IPR001881EGF-like calcium-binding domainPFAMPF07645EGF_CAcoord: 10..42
e-value: 2.4E-6
score: 27.5
coord: 63..104
e-value: 2.9E-12
score: 46.5
IPR000742EGF-like domainSMARTSM00181egf_5coord: 109..150
e-value: 12.0
score: 14.8
coord: 13..62
e-value: 0.087
score: 21.9
coord: 66..105
e-value: 0.0029
score: 26.9
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 10..44
score: 8.713
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 106..150
score: 6.81
NoneNo IPR availableGENE3D2.10.25.10coord: 14..33
e-value: 3.2E-10
score: 39.4
NoneNo IPR availableGENE3D2.40.155.10coord: 34..62
e-value: 1.0E-9
score: 37.7
NoneNo IPR availableGENE3D2.10.25.10coord: 63..106
e-value: 5.9E-11
score: 41.8
NoneNo IPR availableGENE3D2.10.25.10coord: 1..13
e-value: 0.01
score: 15.3
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 4..42
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 56..100
IPR028974TSP type-3 repeatGENE3D4.10.1080.10coord: 227..253
e-value: 1.4E-5
score: 24.3
coord: 117..226
e-value: 3.2E-19
score: 68.5
IPR028974TSP type-3 repeatSUPERFAMILY103647TSP type-3 repeatcoord: 143..252
IPR003367Thrombospondin, type 3-like repeatPFAMPF02412TSP_3coord: 185..219
e-value: 1.0E-11
score: 44.2
IPR018097EGF-like calcium-binding, conserved sitePROSITEPS01187EGF_CAcoord: 63..89
IPR017897Thrombospondin, type 3 repeatPROSITEPS51234TSP3coord: 151..183
score: 12.11
IPR017897Thrombospondin, type 3 repeatPROSITEPS51234TSP3coord: 184..219
score: 15.369
IPR017897Thrombospondin, type 3 repeatPROSITEPS51234TSP3coord: 220..242
score: 9.866
IPR017897Thrombospondin, type 3 repeatPROSITEPS51234TSP3coord: 243..253
score: 7.105

Blast
[Close]
BLAST of TCONS_00019320-protein vs. Swiss-Prot (Human)
Match: COMP (Cartilage oligomeric matrix protein OS=Homo sapiens GN=COMP PE=1 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 4.868e-72
Identity = 126/252 (50.00%), Postives = 155/252 (61.51%), Query Frame = 0 
Query:    1 MEGNGSTCTDINECLENPCSPLTKCENRLPGYVCHQCPSGYKGEQLVGIGREHARLKKQVCIDIDECLVGTHKCDDNAICINKKGSYECGPCRSGYRKGIDSNCVHLEICRGRPGSPSNPCSKYATC-HPISGGALCKCRPSMAGDGYHCGKDTDGDGIPDQQLQCDSKHCQKDNCMNTPNSGQSDLDDDGKGDACDTDLDGDGIYNQVDNCPRHSNHDQSNSDNDKIGDACDNCLFTKNDHQQDVDGDGIG 251
              GNGS CTD+NEC  +PC P  +C N  PG+ C  CP GY G    G+G   A+  KQVC DI+EC  G H C  N++CIN +GS++CGPC+ G+     S C          GSPS  C ++A C     G   C C    AG+G  CG+DTD DG PD++L+C  + C+KDNC+  PNSGQ D+D DG GDACD D DGDG+ N+ DNCP   N DQ N+D DK GDACDNC   KND Q+D D DG G
Sbjct:  118 FTGNGSHCTDVNECNAHPCFPRVRCINTSPGFRCEACPPGYSGPTHQGVGLAFAKANKQVCTDINECETGQHNCVPNSVCINTRGSFQCGPCQPGFVGDQASGCQRRAQRFCPDGSPSE-CHEHADCVLERDGSRSCVCAVGWAGNGILCGRDTDLDGFPDEKLRCPERQCRKDNCVTVPNSGQEDVDRDGIGDACDPDADGDGVPNEKDNCPLVRNPDQRNTDEDKWGDACDNCRSQKNDDQKDTDQDGRG 368
The following BLAST results are available for this feature:
BLAST of TCONS_00019320-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COMP4.868e-7250.00Cartilage oligomeric matrix protein OS=Homo sapien... [more]
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