TCONS_00019089-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00019089-protein
Unique Name	TCONS_00019089-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	356

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00019089-protein ID=TCONS_00019089-protein|Name=TCONS_00019089-protein|organism=Clytia hemisphaerica|type=polypeptide|length=356bp
MQKAKEYDWKESNMALFGSDTEKKVKKESAESEPAWQGAGEEVGLKIWRI
VKFEVTGWEDDQYGEFYNGDSYIILNTYKEPEGDELKHDVHFWIGKYSTQ
DEYGTAAYKTVELDTFLDDKPVQHREVQGHESSLFKSYFDSMSLLEGGAD
TGFKRVLPEAYEPRLFVVQKGANKKITCSQIELKRGNLSSDNVYIIDNGL
NVYQWNGSDCSPDEKFKAATEVDKIEGKRSGCKTHTLEERSCGDNHPAIQ
ILGPGKSEDAGEMPEGEKKVLKIKDGEDVEEVASGDDISKDQLQSDDVYI
INTGDHVYCWVGKGASVDERKNGIPYACNYLSKTETPWLPVSVVAEGSEP
NVAFFA

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010704	XLOC_010704	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00019089	TCONS_00019089	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007122	Villin/Gelsolin
IPR029006	ADF-H/Gelsolin-like_dom
IPR007123	Gelsolin-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0051015	actin filament binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0051015	actin filament binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007122	Villin/Gelsolin	PRINTS	PR00597	GELSOLIN	coord: 62..78 score: 52.41 coord: 176..196 score: 17.75 coord: 290..312 score: 37.15 coord: 122..142 score: 35.71
IPR007122	Villin/Gelsolin	SMART	SM00262	VILL_6	coord: 43..142 e-value: 1.1E-22 score: 91.3 coord: 163..255 e-value: 1.9E-9 score: 47.4 coord: 266..356 e-value: 1.1E-4 score: 31.6
IPR029006	ADF-H/Gelsolin-like domain	GENE3D	3.40.20.10		coord: 27..153 e-value: 1.9E-30 score: 104.7
IPR029006	ADF-H/Gelsolin-like domain	GENE3D	3.40.20.10		coord: 260..355 e-value: 1.5E-14 score: 53.3
IPR029006	ADF-H/Gelsolin-like domain	GENE3D	3.40.20.10		coord: 160..259 e-value: 2.3E-13 score: 49.6
IPR007123	Gelsolin-like domain	PFAM	PF00626	Gelsolin	coord: 63..135 e-value: 2.7E-14 score: 52.7 coord: 181..229 e-value: 4.7E-9 score: 35.9 coord: 286..351 e-value: 8.6E-9 score: 35.1
None	No IPR available	CDD	cd11290	gelsolin_S1_like	coord: 36..148 e-value: 6.20488E-54 score: 174.334
None	No IPR available	SUPERFAMILY	55753	Actin depolymerizing proteins	coord: 268..351
None	No IPR available	SUPERFAMILY	55753	Actin depolymerizing proteins	coord: 146..231
None	No IPR available	SUPERFAMILY	55753	Actin depolymerizing proteins	coord: 33..171

Blast

[Close]

BLAST of TCONS_00019089-protein vs. Swiss-Prot (Human)
Match: GELS (Gelsolin OS=Homo sapiens GN=GSN PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.036e-51
Identity = 116/335 (34.63%), Postives = 195/335 (58.21%), Query Frame = 0

Query:   34 PAWQGAGEEVGLKIWRIVKFEVTGWEDDQYGEFYNGDSYIILNTYKEPEGDELKHDVHFWIGKYSTQDEYGTAAYKTVELDTFLDDKPVQHREVQGHESSLFKSYFDS-MSLLEGGADTGFKRVLP-EAYEPRLFVVQKGANKKITCSQIELKRGNLSSDNVYIIDNGLNVYQWNGSDCSPDEKFKAATEVDK--IEGKRSG-CKTHTLEERSCGDNHPAIQILGPGKSEDAGEMPEGEK--------KVLKIKDGE---DVEEVASGDDISKDQLQSDDVYIINTGD--HVYCWVGKGASVDERKNGIPYACNYLSKTETP-WLPVSVVAEGSE 349
            P +  AG+E GL+IWR+ KF++     + YG+F+ GD+Y+IL T +   G+ L++D+H+W+G   +QDE G AA  TV+LD +L+ + VQHREVQG ES+ F  YF S +   +GG  +GFK V+P E    RLF V+    + +  +++ +   + ++ + +I+D G N++QW GS+ +  E+ K AT+V K   + +RSG  + H  EE +  +    +Q+LGP  +  AG     ++        K+ K+ +G     V  VA  +  ++  L+S+D +I++ G    ++ W GK A+ +ERK  +  A ++++K + P    VSV+ EG E
Sbjct:   57 PEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGN-LQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFKHVVPNEVVVQRLFQVK--GRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERLK-ATQVSKGIRDNERSGRARVHVSEEGT--EPEAMLQVLGPKPALPAGTEDTAKEDAANRKLAKLYKVSNGAGTMSVSLVADENPFAQGALKSEDCFILDHGKDGKIFVWKGKQANTEERKAALKTASDFITKMDYPKQTQVSVLPEGGE 385

HSP 2 Score: 107.457 bits (267), Expect = 1.844e-25
Identity = 95/318 (29.87%), Postives = 139/318 (43.71%), Query Frame = 0

Query:   46 KIWRIVKFEVTGWEDDQYGEFYNGDSYIILNTYKEPEGDELKHDVHFWIGKYSTQDEYGTAAYKTVELDTFLDDKPVQHREVQGHESSLFKSYF--DSMSLLEGGADTGFKRVLPEAYEPRLFVVQKGANKKITCSQIELKRGNLSSDNVYIIDNGLNVYQWNGSDCSPDEKFKA--------ATEVDKIEGKRSGCKTHTLEERSCGDNHPAIQILGPGKSEDAGEMPEGEKKVLKIKDGEDVEEVASGDDISKDQLQSDDVYIINTGDHVYCWVGKGASVDERKNGIPYACNYL---SKTETPWLPVSVVAEGSEP 350
            +IWRI        +   YG+FY GDSYIIL  Y+   G      ++ W G  STQDE   +A  T +LD  L   PVQ R VQG E +   S F    M + +GG      +  P +   RLF V+  +       ++  K G L+S++ +++      Y W G+  S  EK  A        A  V   EG         L  ++     P ++     K  DA   P       KI  G  V E   G+ + +D L +DDV +++T D V+ WVGK +  +E+   +  A  Y+           P++VV +G EP
Sbjct:  448 QIWRIEGSNKVPVDPATYGQFYGGDSYIILYNYRH--GGRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGTSREGGQTAPAST--RLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEKTGAQELLRVLRAQPVQVAEGSEPDGFWEALGGKAAYRTSPRLK----DKKMDA-HPPRLFACSNKI--GRFVIEEVPGELMQED-LATDDVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRYIETDPANRDRRTPITVVKQGFEP 753

The following BLAST results are available for this feature:

BLAST of TCONS_00019089-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00019089-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GELS	2.036e-51	34.63	Gelsolin OS=Homo sapiens GN=GSN PE=1 SV=1	[more]

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TCONS_00019089-protein (polypeptide) - C. hemisphaerica