TCONS_00018883-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018883-protein
Unique NameTCONS_00018883-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1627

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018883-protein ID=TCONS_00018883-protein|Name=TCONS_00018883-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1627bp
ATSCSRAANGHLLFHPKDPFLKRWKIVMTVSAVCFCFFHTYVMAYKTSFG
RTGYGTNNTLKAMFALLYLMDMMYLIDIYIQIRTAIIDDSAGLCSDSMTL
LKRYFKTYNVILDVLTVFPLEILALTAAGNTDKCWILVTFLRANRLVKIY
KLFELLQDFLADIHFNVVIVHIIKLAFMILFITHTCGCVWFIQACFGDTC
DPDSWADAAGITADTSMFDAYTRSIYWAAATMTSTGYGDITAGTSRGEFI
VLFVLIIGLLMYGYCLSSIAAILTNSLSAKIEFTGRIIGVTSFMSEQNLN
QALIERVERYLGLVWRIHKGQAIPGAELLMGDLPMRLQEEVAYEEMHKII
MKVPIFMNTDDSFMRQLTAKLITYVFMPGDTIVYSGDVGREMYIMRRGLV
EVLSKEQNVMATLGPGGYFGEVGLIFGEPRTADVRAKTFCELAMLRKSDL
DEVLVNFPLIEKQLEATGSNENVLRKIKEVAKQAGGTRKANRIDIIDKTR
KLRSNSTFRRQSIIKELTEEETNVNEQLNKEFSEPYAGLHPILRFSSYFL
MRNTINPNSMFFTTWTAVTVAVSCVYFCTLGFNIAFLKDNQILQILNYSF
DFFFIVDIYIKMHVCFYNSDGVLVTHPTTTAKNYFRRSFILDFIAVLPID
AFLLNSSNGVYALGKLNRILHLIPVSQYFQYLDTPIQSGNSSIVRGIKFG
TYMYLLTHLFACFWFLIGCPNNSSQINMKQQPTSRYDSHGKLHYRSLEYD
VNKTYECIINSWAMQEGRDLGGESVYVQYITTMYWAAATTCSVGYGDIHP
YVTDEMLLALVCMIVGVVFYGYIIASAAASLANADVQRARYQQKLDTINR
FLKEQHIRADLEKRVKGFYEFMWNRNKGVDLENLFLGLPISLQADITLSL
YKDIIESVPLFQGTELGFTKMLSLYIQPLLVPKGEYIVRKGDIGEEMFFI
NKGVVEVVSEHKVPIIFDTMTPGRFFGEISTIFKCPRTASIRTQTNVEMF
VLKKKHLDVVLSHYPQIKKKIIETAEERQRMVAERAAAFAKKKKEEEDAK
KRKEEEDRLKGNSNNGGNRDENSSLLNESECTEFGGIESEVVAVPSLKTQ
LSYWIYGKTAMLRDELKFVLPINSRWQILFNFNIFAIFITFITTTYMATF
QHHPEALIVFNIFAEFGFYFEMYLNFHMSYLTKTGDVESDYNQIFEHYFK
GKFCFDAIANFPLQLFCFVSTSDKMRYYSYLNVVHLIRIKRLRDWFSKYL
KKLNINVLLIRLTENLIQITLALQTFACIWYITACPNNQCRPGTWATKRQ
DNSDPEYLWLPEENYGDCVYWALATMTSAGYGDIHANNLTEKVIATVVMI
FGKLLFGFVLGNVASTMANAELLRVLFEERFAAIQTYMKEQTMPLDIQSR
VVNFYQYIWRRNRGSSNDSIFNDLPPCLNAELCFELTGEFIKSVPCFKDC
ELPFIRLLSTKTKLIQFHQDEFITRKGDIGSEMYFIRSGVAKELGEYGLD
ILIVEADKTRRGRKINAYGTSRAYDFWFSNDNLEWQFSAFMCEVESQEEK
DQRPSATTRKEVRDMLNSKFRKQIGKRSTVPYKKIKDGIVEVRGVPMDFD
FRNLSAYANWEMEIIKEHIEDISFIVK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010579XLOC_010579Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018883TCONS_00018883Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003938K_chnl_volt-dep_EAG/ELK/ERG
IPR000595cNMP-bd_dom
IPR004212GTF2I
IPR014710RmlC-like_jellyroll
IPR005821Ion_trans_dom
IPR018488cNMP-bd_CS
IPR018490cNMP-bd-like
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1036..1062
NoneNo IPR availableCOILSCoilCoilcoord: 514..534
NoneNo IPR availableGENE3D1.10.287.70coord: 1264..1370
e-value: 6.9E-18
score: 63.7
NoneNo IPR availableGENE3D1.20.120.350coord: 1122..1263
e-value: 5.0E-4
score: 19.3
coord: 557..684
e-value: 1.1E-9
score: 37.6
coord: 23..160
e-value: 8.7E-4
score: 18.5
NoneNo IPR availableGENE3D1.10.287.70coord: 161..277
e-value: 5.9E-18
score: 63.9
NoneNo IPR availableGENE3D1.10.287.70coord: 685..832
e-value: 8.9E-17
score: 60.5
NoneNo IPR availableGENE3D1.10.287.630coord: 1371..1424
e-value: 1.2E-11
score: 44.3
coord: 833..896
e-value: 3.5E-13
score: 49.2
coord: 278..332
e-value: 0.001
score: 18.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1043..1076
NoneNo IPR availableCDDcd00038CAP_EDcoord: 355..464
e-value: 1.20111E-22
score: 95.0853
NoneNo IPR availableCDDcd00038CAP_EDcoord: 922..1022
e-value: 5.05118E-20
score: 87.3813
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 772..831
coord: 559..721
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 17..273
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 1125..1368
IPR003938Potassium channel, voltage-dependent, EAG/ELK/ERGPRINTSPR01463EAGCHANLFMLYcoord: 705..715
score: 48.3
coord: 805..816
score: 27.34
coord: 597..607
score: 36.08
coord: 873..880
score: 42.19
coord: 779..796
score: 39.24
IPR000595Cyclic nucleotide-binding domainSMARTSM00100cnmp_10coord: 910..1029
e-value: 2.7E-19
score: 80.1
coord: 355..469
e-value: 1.5E-18
score: 77.6
IPR000595Cyclic nucleotide-binding domainPFAMPF00027cNMP_bindingcoord: 931..1012
e-value: 7.9E-17
score: 61.0
coord: 376..454
e-value: 8.2E-19
score: 67.3
IPR000595Cyclic nucleotide-binding domainPROSITEPS50042CNMP_BINDING_3coord: 910..1028
score: 24.609
IPR000595Cyclic nucleotide-binding domainPROSITEPS50042CNMP_BINDING_3coord: 355..454
score: 27.364
IPR000595Cyclic nucleotide-binding domainPROSITEPS50042CNMP_BINDING_3coord: 1446..1489
score: 7.576
IPR004212GTF2I-like repeatGENE3D3.90.1460.10coord: 1555..1627
e-value: 1.0E-9
score: 37.7
IPR004212GTF2I-like repeatPFAMPF02946GTF2Icoord: 1559..1627
e-value: 3.0E-7
score: 30.3
IPR004212GTF2I-like repeatPROSITEPS51139GTF2Icoord: 1549..1627
score: 9.788
IPR004212GTF2I-like repeatSUPERFAMILY117773GTF2I-like repeatcoord: 1558..1627
IPR014710RmlC-like jelly roll foldGENE3D2.60.120.10coord: 897..1042
e-value: 3.0E-31
score: 107.5
IPR014710RmlC-like jelly roll foldGENE3D2.60.120.10coord: 1425..1505
e-value: 5.0E-11
score: 41.9
IPR014710RmlC-like jelly roll foldGENE3D2.60.120.10coord: 333..526
e-value: 2.0E-30
score: 105.0
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 563..836
e-value: 6.4E-23
score: 81.2
coord: 1131..1369
e-value: 2.0E-19
score: 69.7
coord: 33..270
e-value: 2.2E-17
score: 63.0
IPR018488Cyclic nucleotide-binding, conserved sitePROSITEPS00888CNMP_BINDING_1coord: 937..953
IPR018488Cyclic nucleotide-binding, conserved sitePROSITEPS00888CNMP_BINDING_1coord: 382..398
IPR018488Cyclic nucleotide-binding, conserved sitePROSITEPS00889CNMP_BINDING_2coord: 419..436
IPR018490Cyclic nucleotide-binding-likeSUPERFAMILY51206cAMP-binding domain-likecoord: 280..464
IPR018490Cyclic nucleotide-binding-likeSUPERFAMILY51206cAMP-binding domain-likecoord: 1376..1492
IPR018490Cyclic nucleotide-binding-likeSUPERFAMILY51206cAMP-binding domain-likecoord: 837..1028

Blast
BLAST of TCONS_00018883-protein vs. Swiss-Prot (Human)
Match: CNGA3 (Cyclic nucleotide-gated cation channel alpha-3 OS=Homo sapiens GN=CNGA3 PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 2.915e-45
Identity = 139/528 (26.33%), Postives = 256/528 (48.48%), Query Frame = 0
Query:  555 INPNSMFFTTW-TAVTVAVSCVYF---CTLGFNIAFLKDNQILQILNYSFDFFFIVDIYIKMHVCFYNSDGVLVTHPTTTAKNYFRRS-FILDFIAVLPID-AFLLNSSNGVYALGKLNRILHLIPVSQYFQYLD-TPIQSGNSSIVRGIKFGTYMYLLTHLFACFWF----LIGCPNNSSQINMKQQPTSRYDSHGKLHYRSLEYDVNKTYECIINSWAMQEGRDLGGESVYVQYITTMYWAAATTCSVGYGDIHPYVTDE-MLLALVCMIVGVVFYGYIIASAAASLANADVQRARYQQKLDTINRFLKEQHIRADLEKRVKGFYEFMWNRNKGVDLENLFLGLPISLQADITLSLYKDIIESVPLFQGTELGFTKMLSLYIQPLLVPKGEYIVRKGDIGEEMFFINKGVVEVVSEHKVPIIFDTMTPGRFFGEISTI------FKCPRTASIRTQTNVEMFVLKKKHLDVVLSHYPQIKKKIIETAEE---RQRMVAER-AAAFAKKKKEEEDAKKRKEEEDRLK 1060
            ++P+S  +  W TA+ + V   ++   C   F+    +   +  +L+YS D  +++D+ ++    F    G++V+      ++Y   + F LD ++++P D A+L   +N  Y   + NR+L     S+ F++ D T  ++   ++ R      Y+ ++ H  AC +F     IG   +S        P      HG+L  +                                 YI ++YW+  T  ++G  +  P V DE  L  +V  +VGV+ +  I+ +  + ++N +  RA +Q K+D+I ++++ + +  DLE RV  +++++W   K VD + +   LP  L+A+I ++++ D ++ V +FQ  E G    L L ++P +   G+YI +KGDIG+EM+ IN+G + VV++  V   F  ++ G +FGEIS +          RTA+IR+    ++F L K  L   L+ YP+ KK + E   +   +  ++ E  A A A  K  EE  ++     D L+
Sbjct:  161 VDPSSNLYYRWLTAIALPVFYNWYLLICRACFDELQSEYLMLWLVLDYSADVLYVLDVLVRARTGFLEQ-GLMVSDTNRLWQHYKTTTQFKLDVLSLVPTDLAYLKVGTN--YPEVRFNRLLKF---SRLFEFFDRTETRTNYPNMFRIGNLVLYILIIIHWNACIYFAISKFIGFGTDSWVY-----PNISIPEHGRLSRK---------------------------------YIYSLYWSTLTLTTIG--ETPPPVKDEEYLFVVVDFLVGVLIFATIVGNVGSMISNMNASRAEFQAKIDSIKQYMQFRKVTKDLETRVIRWFDYLWANKKTVDEKEVLKSLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLRPTVFSPGDYICKKGDIGKEMYIINEGKLAVVADDGV-TQFVVLSDGSYFGEISILNIKGSKSGNRRTANIRSIGYSDLFCLSKDDLMEALTEYPEAKKALEEKGRQILMKDNLIDEELARAGADPKDLEEKVEQLGSSLDTLQ 641          

HSP 2 Score: 157.918 bits (398), Expect = 1.843e-39
Identity = 133/510 (26.08%), Postives = 237/510 (46.47%), Query Frame = 0
Query:   12 LLFHPKDPFLKRWKIVMTVSAVCFCFFHTYVMAYKTSFGRTGYGTNNTLKAMFALLYLM-----DMMYLIDIYIQIRTAIIDDSAGLCSDSMTLLKRYFKTYNVILDVLTVFPLEILALTAAGNTDKCWILVTFLRANRLVKIYKLFELLQDFLADIHFNVVIVHIIKLAFMILFITHTCGCVWFIQACFGDTCDPDSWA-DAAGITADTSMFDAYTRSIYWAAATMTSTGYGDITAGTSRGEFIVLFVLIIGLLMYGYCLSSIAAILTNSLSAKIEFTGRIIGVTSFMSEQNLNQALIERVERYLGLVWRIHKGQAIPGAELLMGDLPMRLQEEVAYEEMHKIIMKVPIFMNTDDSFMRQLTAKLITYVFMPGDTIVYSGDVGREMYIMRRGLVEVLSKEQ-NVMATLGPGGYFGEVGLI------FGEPRTADVRAKTFCELAMLRKSDLDEVLVNFPLIEKQLEATGSNENVLRK---IKEVAKQAGGTRKANRIDIIDKTRKLRSN 505
            ++  P      RW   + +      F++ Y++  +  F        + L++ + +L+L+     D++Y++D+ ++ RT  ++    + SD+  L + Y  T    LDVL++ P ++  L    N  +       +R NRL+K  +LFE         ++  +   I  L   IL I H   C++F  + F      DSW      I     +   Y  S+YW+  T+T+ G            F+V+  L+ G+L++   + ++ ++++N  +++ EF  +I  +  +M  + + + L  RV R+   +W   K   +   E+L   LP +L+ E+A       + KV IF + +   + +L  KL   VF PGD I   GD+G+EMYI+  G + V++ +       L  G YFGE+ ++       G  RTA++R+  + +L  L K DL E L  +P  +K LE  G    +L K   I E   +AG   K    D+ +K  +L S+
Sbjct:  159 IVVDPSSNLYYRWLTAIALP----VFYNWYLLICRACF--------DELQSEYLMLWLVLDYSADVLYVLDVLVRARTGFLEQGL-MVSDTNRLWQHYKTTTQFKLDVLSLVPTDLAYLKVGTNYPE-------VRFNRLLKFSRLFEFFDRTETRTNYPNMF-RIGNLVLYILIIIHWNACIYFAISKF-IGFGTDSWVYPNISIPEHGRLSRKYIYSLYWSTLTLTTIGETPPPVKDEEYLFVVVDFLV-GVLIFATIVGNVGSMISNMNASRAEFQAKIDSIKQYMQFRKVTKDLETRVIRWFDYLWANKK--TVDEKEVLKS-LPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLRPTVFSPGDYICKKGDIGKEMYIINEGKLAVVADDGVTQFVVLSDGSYFGEISILNIKGSKSGNRRTANIRSIGYSDLFCLSKDDLMEALTEYPEAKKALEEKG--RQILMKDNLIDEELARAGADPK----DLEEKVEQLGSS 636          

HSP 3 Score: 108.612 bits (270), Expect = 7.245e-24
Identity = 86/354 (24.29%), Postives = 169/354 (47.74%), Query Frame = 0
Query: 1158 IVFNIFAEFGFYFEMYLNFHMSYLTKTGDVESDYNQIFEHY-FKGKFCFDAIANFPLQL-FCFVSTSDKMRYYSYLNVVHLIRIKRLRDWFSKYLKKLNINVLLIRLTENLIQITLALQTFACIWYITACPNNQCRPGTWATKRQDNSDPEYLWLPEENYGDCVYWALATMTSAGYGDIHANNLTEKVIATVVMIFGKLLFGFVLGNVASTMANAELLRVLFEERFAAIQTYMKEQTMPLDIQSRVVNFYQYIWRRNRGSSNDSIFNDLPPCLNAELCFELTGEFIKSVPCFKDCELPFIRLLSTKTKLIQFHQDEFITRKGDIGSEMYFIRSGVAKELGEYGLDILIVEADKT 1509
            +V +  A+  +  ++ +     +L + G + SD N++++HY    +F  D ++  P  L +  V T+     Y  +    L++  RL ++F +   + N   +  R+   ++ I + +   ACI++  +        GT +    + S PE+  L  + Y   +YW+  T+T+ G       +  E +   V  + G L+F  ++GNV S ++N    R  F+ +  +I+ YM+ + +  D+++RV+ ++ Y+W   +      +   LP  L AE+   +  + +K V  F+DCE   +  L  K +   F   ++I +KGDIG EMY I  G    + + G+   +V +D +
Sbjct:  204 LVLDYSADVLYVLDVLVRARTGFLEQ-GLMVSDTNRLWQHYKTTTQFKLDVLSLVPTDLAYLKVGTN-----YPEVRFNRLLKFSRLFEFFDRTETRTNYPNMF-RIGNLVLYILIIIHWNACIYFAIS---KFIGFGTDSWVYPNISIPEHGRLSRK-YIYSLYWSTLTLTTIGETPPPVKD-EEYLFVVVDFLVGVLIFATIVGNVGSMISNMNASRAEFQAKIDSIKQYMQFRKVTKDLETRVIRWFDYLWANKKTVDEKEVLKSLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLRPTVFSPGDYICKKGDIGKEMYIINEGKLAVVADDGVTQFVVLSDGS 545          
The following BLAST results are available for this feature:
BLAST of TCONS_00018883-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNGA32.915e-4526.33Cyclic nucleotide-gated cation channel alpha-3 OS=... [more]
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