TCONS_00018452-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018452-protein
Unique NameTCONS_00018452-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length583

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018452-protein ID=TCONS_00018452-protein|Name=TCONS_00018452-protein|organism=Clytia hemisphaerica|type=polypeptide|length=583bp
MLKLFRRRKGITSRSLRNLSATSQFSSANQNFDSSHDYVIVGTGSAGCVL
SNRLTEDGENTVLALEAGPKDPWWQWKIHMPAAMTYNLCNDNYNWYYHTA
PQKGLNNRVLYWPRGRVWGGSSGLNAMVYVRGHAHDYDRWQSEGAEGWSY
ADCLPYFRKSQTHQEGGDDYRGGEGPLHVSRGTMSNPLHQAFLEAGQQAG
YQYVDDLNGFQQEGVGPFDRTIHNGKRWSASQAYLHPVLERKNLTAQDRA
MTLKVIFEGDKAVGVEYMHKNKIKRAKANKEVILSGGSINTPQLLMLSGV
GDENELKEHGIPLVHHLPGVGKNLQDHLEVYVQQRCTQPVTLYKQTRLWY
MPFIGSQWFMTRTGDCATNSLETGGFIRSREGVPHPDIQIHFLPFAVKDH
GRVFPDGHAYQFHSGTMRETSVGTLKLKSSDPRDHPILDPNYLDTPDDIV
DLRNAVKLSREIMSQKAFDPFRGDEMLPGSHVQSDEEIDAFIREHGDSAY
HPSCTCKMGASDDPLAVTDSQTRVHGLQNLRIVDASIMPSVVSGNLNGPV
IMMAEKAADIIRGRDPLPKSTAPVYETPATGQR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010344XLOC_010344Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018452TCONS_00018452Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011533BetA
IPR000172GMC_OxRdtase_N
IPR012132GMC_OxRdtase
IPR007867GMC_OxRtase_C
IPR023753FAD/NAD-binding_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008812choline dehydrogenase activity
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
GO:0050660flavin adenine dinucleotide binding
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0019285glycine betaine biosynthetic process from choline
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019285 glycine betaine biosynthetic process from choline
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0008812 choline dehydrogenase activity
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011533Oxygen-dependent choline dehydrogenaseTIGRFAMTIGR01810TIGR01810coord: 37..567
e-value: 2.7E-229
score: 760.2
IPR000172Glucose-methanol-choline oxidoreductase, N-terminalPFAMPF00732GMC_oxred_Ncoord: 37..328
e-value: 3.4E-94
score: 315.5
IPR000172Glucose-methanol-choline oxidoreductase, N-terminalPROSITEPS00623GMC_OXRED_1coord: 115..138
IPR000172Glucose-methanol-choline oxidoreductase, N-terminalPROSITEPS00624GMC_OXRED_2coord: 287..301
NoneNo IPR availableGENE3D3.30.560.10coord: 137..520
e-value: 4.7E-110
score: 367.4
NoneNo IPR availableGENE3D4.10.450.10coord: 72..136
e-value: 4.2E-26
score: 89.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 564..583
NoneNo IPR availableSUPERFAMILY54373FAD-linked reductases, C-terminal domaincoord: 323..505
IPR012132Glucose-methanol-choline oxidoreductasePIRSFPIRSF000137Alcohol_oxidasecoord: 12..567
e-value: 1.3E-146
score: 487.8
IPR007867Glucose-methanol-choline oxidoreductase, C-terminalPFAMPF05199GMC_oxred_Ccoord: 420..557
e-value: 8.2E-41
score: 139.8
IPR023753FAD/NAD(P)-binding domainSUPERFAMILY51905FAD/NAD(P)-binding domaincoord: 504..565
coord: 33..321

Blast
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BLAST of TCONS_00018452-protein vs. Swiss-Prot (Human)
Match: CHDH (Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=1 SV=2)

HSP 1 Score: 730.709 bits (1885), Expect = 0.000e+0
Identity = 352/565 (62.30%), Postives = 423/565 (74.87%), Query Frame = 0 
Query:   17 RNLSATSQFSSANQNFDSSHDYVIVGTGSAGCVLSNRLTEDGENTVLALEAGPKDPW-----WQWKIHMPAAMTYNLCNDNYNWYYHTAPQKGLNNRVLYWPRGRVWGGSSGLNAMVYVRGHAHDYDRWQSEGAEGWSYADCLPYFRKSQTHQEGGDDYRGGEGPLHVSRGTMSNPLHQAFLEAGQQAGYQYVDDLNGFQQEGVGPFDRTIHNGKRWSASQAYLHPVLERKNLTAQDRAMTLKVIFEGDKAVGVEYMHKNKIKRAKANKEVILSGGSINTPQLLMLSGVGDENELKEHGIPLVHHLPGVGKNLQDHLEVYVQQRCTQPVTLYKQTRLWYMPFIGSQWFMTRTGDCATNSLETGGFIRSREGVPHPDIQIHFLPFAVKDHGRVFPDGHAYQFHSGTMRETSVGTLKLKSSDPRDHPILDPNYLDTPDDIVDLRNAVKLSREIMSQKAFDPFRGDEMLPGSHVQSDEEIDAFIREHGDSAYHPSCTCKMGASDDPLAVTDSQTRVHGLQNLRIVDASIMPSVVSGNLNGPVIMMAEKAADIIRGRDPLPKSTAPVYE 576
            ++L A +  S+ +++ D  + YV+VG GSAGCVL+ RLTED    VL LEAGPKD         WKIHMPAA+  NLC+D YNW YHT  Q+GL+ RVLYWPRGRVWGGSS LNAMVYVRGHA DY+RWQ +GA GW YA CLPYFRK+Q H+ G   YRG +GPL VSRG  ++PLH AFLEA QQAGY   +D+NGFQQEG G  D TIH GKRWSA+ AYLHP L R NL A+   +  +V+FEG +AVGVEY+   +  RA A+KEVILSGG+IN+PQLLMLSG+G+ ++LK+ GIP+V HLPGVG+NLQDHLE+Y+QQ CT+P+TL+   +      IG +W    TG+ AT  LETGGFIRS+ GVPHPDIQ HFLP  V DHGRV     AYQ H G MR TSVG LKL+S++P+DHP++ PNYL T  DI D R  VKL+REI +Q+A  PFRG E+ PGSH+QSD+EIDAF+R   DSAYHPSCTCKMG   DP AV D QTRV G++NLR+VDASIMPS+VSGNLN P IM+AEKAADII+G+  L     PVY+
Sbjct:   23 QSLGARALASAGSESRDE-YSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLCDDRYNWCYHTEVQRGLDGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGHELGASRYRGADGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLFEGTRAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITLHSAQKPLRKVCIGLEWLWKFTGEGATAHLETGGFIRSQPGVPHPDIQFHFLPSQVIDHGRVPTQQEAYQVHVGPMRGTSVGWLKLRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTREIFAQEALAPFRGKELQPGSHIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAPTIMIAEKAADIIKGQPALWDKDVPVYK 586
The following BLAST results are available for this feature:
BLAST of TCONS_00018452-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHDH0.000e+062.30Choline dehydrogenase, mitochondrial OS=Homo sapie... [more]
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