TCONS_00018421-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018421-protein
Unique NameTCONS_00018421-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length465

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018421-protein ID=TCONS_00018421-protein|Name=TCONS_00018421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp
MTINCDTMKLTIEEPVTPHITPSMLGVVTDDVTKIINNNTITEPTIMIEC
NGHAPKTITENSDKRQEDEFFVEEEQNESLDNLSSLRPSASTVSLSLLRV
REQHPSPPHSQHPSPPHSPLLQTSFDFPGKLTNKPPVSPKLRPRIRKSVD
SDPSIYGRAGGNTDSSTQLGNSFQSRVKNWVNTGSHEQISIEGQLNVKTD
RLSTRESSEESLKSISPYRRRRAMEYSDRNRSVSISIDKDEEIRILQIEI
DKFRARLSTLEELMNKKSLLNSQHLSRTSSNDILNENLLTDSQKVNKDRV
YINIGGVRHETYRSTLKNIPDTRLSWIAEESATHSPEYDPTAGEFFFDRH
PQVFSHILNYYRTGNLHVPYDVCGPLFEEELNYWGIDDSQVESCCWLSYR
QHRDAQDTLKDFEGIELEKNYDDDSEPDLSKYGFDVSGGDDEEEKVTCYR
KWQPVMWKLMEDPYX
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010335XLOC_010335Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018421TCONS_00018421Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003974K_chnl_volt-dep_Kv3
IPR000210BTB/POZ_dom
IPR003131T1-type_BTB
IPR011333SKP1/BTB/POZ
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0051260protein homooligomerization
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006813 potassium ion transport
biological_process GO:0051260 protein homooligomerization
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005515 protein binding
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 243..263
NoneNo IPR availableGENE3D3.30.710.10coord: 295..412
e-value: 3.6E-31
score: 107.2
IPR003974Potassium channel, voltage dependent, Kv3PRINTSPR01498SHAWCHANNELcoord: 378..399
score: 63.13
coord: 360..375
score: 80.56
coord: 460..465
score: 23.5
coord: 345..358
score: 74.6
IPR000210BTB/POZ domainSMARTSM00225BTB_4coord: 298..402
e-value: 1.0E-10
score: 51.6
IPR003131Potassium channel tetramerisation-type BTB domainPFAMPF02214BTB_2coord: 300..394
e-value: 2.7E-28
score: 98.1
IPR011333SKP1/BTB/POZ domainSUPERFAMILY54695POZ domaincoord: 298..403

Blast
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BLAST of TCONS_00018421-protein vs. Swiss-Prot (Human)
Match: KCNC1 (Potassium voltage-gated channel subfamily C member 1 OS=Homo sapiens GN=KCNC1 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.485e-59
Identity = 96/188 (51.06%), Postives = 122/188 (64.89%), Query Frame = 0 
Query:  292 SQKVNKDRVYINIGGVRHETYRSTLKNIPDTRLSWIAEESATHSPEYDPTAGEFFFDRHPQVFSHILNYYRTGNLHVPYDVCGPLFEEELNYWGIDDSQVESCCWLSYRQHRDAQDTLKDFEGIELEKNYDDDSEPDLSKYGFDVSGGDDEEEKVT---------------CYRKWQPVMWKLMEDPY 464
             Q    +R+ IN+GG RH+TYRSTL+ +P TRL+W+AE  A    +YDP A EFFFDRHP VF+HILNYYRTG LH P DVCGPL+EEEL +WGID++ VE CCW++YRQHRDA++ L  F G  L     D+S  D    G   SG  ++E ++T                +R+WQP +W L EDPY
Sbjct:    2 GQGDESERIVINVGGTRHQTYRSTLRTLPGTRLAWLAEPDAHSHFDYDPRADEFFFDRHPGVFAHILNYYRTGKLHCPADVCGPLYEEELAFWGIDETDVEPCCWMTYRQHRDAEEALDSFGGAPL-----DNSADDADADGPGDSGDGEDELEMTKRLALSDSPDGRPGGFWRRWQPRIWALFEDPY 184
The following BLAST results are available for this feature:
BLAST of TCONS_00018421-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNC12.485e-5951.06Potassium voltage-gated channel subfamily C member... [more]
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