TCONS_00018377-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018377-protein
Unique NameTCONS_00018377-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length324

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018377-protein ID=TCONS_00018377-protein|Name=TCONS_00018377-protein|organism=Clytia hemisphaerica|type=polypeptide|length=324bp
MGSEEKFDGMLLAMAQQHEGGIKEVLKTFFGFLHRKTDFFHGAPAGVPRS
TILEVLKEFEDAAEKKKEEVQKEKQQREKEFKELKERQKRKEKEEFEKAG
ESAKIEEITEEEADKINKENEKKGCDKSKADPTKDKENEENEEEDEDAKG
KIKPNVGNGADLEKYRWVQTLADIDLYVPTGLKVPLKSRDIIVEFTHSHL
KVGLKGHPPIIDDEMPNKVKVEECYWTLEDRKLIHIFLEKVNKMEWWDKI
VNSDPLMNTKKVQPENSKLSDLDGETRSMVEKMMYDQRQKEMGKPTSDEQ
KKQDMLAKFMAQHPEMDFSKAKFA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010304XLOC_010304Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018377TCONS_00018377Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007052CS_dom
IPR008978HSP20-like_chaperone
IPR025934NudC_N_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 53..94
NoneNo IPR availableCOILSCoilCoilcoord: 321..324
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..155
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 285..324
IPR007052CS domainPFAMPF04969CScoord: 164..240
e-value: 3.8E-15
score: 56.6
IPR007052CS domainPROSITEPS51203CScoord: 160..251
score: 15.832
IPR008978HSP20-like chaperoneGENE3D2.60.40.790coord: 146..267
e-value: 3.7E-26
score: 91.0
IPR008978HSP20-like chaperoneSUPERFAMILY49764HSP20-like chaperonescoord: 158..285
IPR025934NudC N-terminal domainPFAMPF14050Nudc_Ncoord: 6..42
e-value: 1.3E-13
score: 50.6

Blast
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BLAST of TCONS_00018377-protein vs. Swiss-Prot (Human)
Match: NUDC (Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 1.233e-111
Identity = 179/329 (54.41%), Postives = 232/329 (70.52%), Query Frame = 0 
Query:    4 EEKFDGMLLAMAQQHEGGIKEVLKTFFGFLHRKTDFFHGAPAGVPRSTILEVLKEFEDAAEKKKEEVQKEKQQREKEFKELKERQKRKEKE-EFEKAGESAKIEEITEEEADKI--------NKENEKKGCDKSKADPTKDKENEENEEEDEDAKGKIKPNVGNGADLEKYRWVQTLADIDLYVPTGLKVPLKSRDIIVEFTHSHLKVGLKGHPPIIDDEMPNKVKVEECYWTLEDRKLIHIFLEKVNKMEWWDKIVNSDPLMNTKKVQPENSKLSDLDGETRSMVEKMMYDQRQKEMGKPTSDEQKKQDMLAKFMAQHPEMDFSKAKF 323
            EE+FDGMLLAMAQQHEGG++E++ TFF FL RKTDFF G   G+    I +        A+K + E   ++ ++E E +E  ER  R  KE + E +G   +I+E+T+EEA+++        + EN +        D    ++ EE+EEEDE  KGK+KPN+GNGADL  YRW QTL+++DL VP  +   LK +D++V+    HL+VGLKG P IID E+ N+VKVEE  W +ED K++ + LEK+NKMEWW ++V+SDP +NTKK+ PENSKLSDLD ETRSMVEKMMYDQRQK MG PTSDEQKKQ++L KFM QHPEMDFSKAKF
Sbjct:    7 EERFDGMLLAMAQQHEGGVQELVNTFFSFLRRKTDFFIGGEEGMAEKLITQTFSHHNQLAQKTRRE---KRARQEAERREKAERAARLAKEAKSETSG--PQIKELTDEEAERLQLEIDQKKDAENHEAQLKNGSLDSPGKQDTEEDEEEDEKDKGKLKPNLGNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKF 330
The following BLAST results are available for this feature:
BLAST of TCONS_00018377-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NUDC1.233e-11154.41Nuclear migration protein nudC OS=Homo sapiens GN=... [more]
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