TCONS_00018306-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00018306-protein
Unique Name	TCONS_00018306-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	573

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00018306-protein ID=TCONS_00018306-protein|Name=TCONS_00018306-protein|organism=Clytia hemisphaerica|type=polypeptide|length=573bp
MGAALVAFKRCKKLDQPRVLKGGLPRVLGVVDLTFLGVGSTLGAGVYVVA
ADIAKRKAGPGVILSFLIAAIASFLCGLCYSEFGARVPKAGSAYVYAYVT
IGELVAFIIGWNLVLEYLIGAAAVASAWSLYIDSLANNEISYGIRNWIAA
WDTPGISAYPNFLAFVLCLFIMVVLILGVRLSSLFNTAMTVINLAILLFI
ICVGLLLSHPSNWSPFLPYGFTGVLRGSASAFFAFVGFDVIATSAEEVKN
PSKTIPISIFATLLICLFFYAGVGAVLTLLVPYHELKADAALPEAFHQRG
VRWAKYVIGVGAVAGLTASTASSMLPVPRLLYSMADDGLLFPFLGIVSKA
TNTPVFGTILTGVLASLLAFYFDLSHLVEMMSIGTLQAYTMVSICVLLLR
YQSTPVGMIDKENGGFEALTNESIVMEKEMIRLSPTKRSFMLVKTATCVA
FIAILALTWLLANNGLELLHGYFWCVSMFFFFFGLIAVSTTVICLQPQNQ
FDLPFSTPMVPFIPLLSIFFNSFLMMSLTALTWARFIIWMTIGLTIYLFY
GVQHSREDPKNKTQTRRRDTTDQ

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010274	XLOC_010274	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00018306	TCONS_00018306	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR029485	CAT_C
IPR002293	AA/rel_permease1

Vocabulary: **Molecular Function**
Term	Definition
GO:0015171	amino acid transmembrane transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0003333	amino acid transmembrane transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0003333	amino acid transmembrane transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0015171	amino acid transmembrane transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029485	Cationic amino acid transporter, C-terminal	PFAM	PF13906	AA_permease_C	coord: 505..555 e-value: 4.8E-22 score: 77.7
IPR002293	Amino acid/polyamine transporter I	PIRSF	PIRSF006060	AA_transporter	coord: 432..569 e-value: 7.2E-5 score: 18.9 coord: 18..404 e-value: 4.3E-79 score: 263.8
IPR002293	Amino acid/polyamine transporter I	PFAM	PF13520	AA_permease_2	coord: 28..457 e-value: 1.7E-45 score: 155.6

Blast

[Close]

BLAST of TCONS_00018306-protein vs. Swiss-Prot (Human)
Match: CTR3 (Cationic amino acid transporter 3 OS=Homo sapiens GN=SLC7A3 PE=1 SV=1)

HSP 1 Score: 441.039 bits (1133), Expect = 1.713e-148
Identity = 258/608 (42.43%), Postives = 365/608 (60.03%), Query Frame = 0

Query:    7 AFKR-CKKLDQPRVLKGG-----LPRVLGVVDLTFLGVGSTLGAGVYVVAADIAKRKAGPGVILSFLIAAIASFLCGLCYSEFGARVPKAGSAYVYAYVTIGELVAFIIGWNLVLEYLIGAAAVASAWSLYIDSLANNEISYGIRNWIAAWDTPGISAYPNFLAFVLCLFIMVVLILGVRLSSLFNTAMTVINLAILLFIICVGLLLSHPSNWS-------------------------PFLPYGFTGVLRGSASAFFAFVGFDVIATSAEEVKNPSKTIPISIFATLLICLFFYAGVGAVLTLLVPYHELKADAALPEAFHQRGVRWAKYVIGVGAVAGLTASTASSMLPVPRLLYSMADDGLLFPFLGIVSKATNTPVFGTILTGVLASLLAFYFDLSHLVEMMSIGTLQAYTMVSICVLLLRYQSTPVGMIDKENGGFEALTNESIVMEKEMIRL---------SPTKRSFMLVKTATCVAFIAILALTWLLANNGLELLHGYFWCVSMFFFFFGLIAVSTTVICLQPQNQFDLPFSTPMVPFIPLLSIFFNSFLMMSLTALTWARFIIWMTIGLTIYLFYGVQHSREDPKNKTQTR--RRDTTD 572
            AF+R  +KL + R L+ G     L R L  +DL  LGVGSTLGAGVYV+A ++AK KAGP +++ FL+AA++S L GLCY+EFGARVP++GSAY+Y+YVT+GEL AF  GWNL+L Y+IG A+VA AWS   D+L  N IS  ++  IA      ++ YP+F A  L L +  +L LG   S+L     T +NL +L F++  G +     NW                           F+P+GF G+LRG+A+ F+AFVGFD IAT+ EE +NP ++IP+ I  +L +C   Y  V + LTL++PY++L+ ++ LPEAF   G   A+YV+ VG++  L+ S   SM P+PR++Y+MA+DGLLF  L  +   T TP+  T+++G++A+ +AF F L+ LV++MSIGTL AY++VSICVL+LRYQ       + + G    L  E+I  E E + L          PT  S  +V   + +  + + AL  +LA   + LL G     ++      LI     VI  QPQ+   L F  P +P +PL+SIF N +LMM +TA TWARF +WM IG  IY  YG+QHS E+ K+   +R  R  T D
Sbjct:    5 AFRRFGQKLVRRRTLESGMAETRLARCLSTLDLVALGVGSTLGAGVYVLAGEVAKDKAGPSIVICFLVAALSSVLAGLCYAEFGARVPRSGSAYLYSYVTVGELWAFTTGWNLILSYVIGTASVARAWSSAFDNLIGNHISKTLQGSIALHVPHVLAEYPDFFALGLVLLLTGLLALGASESALVTKVFTGVNLLVLGFVMISGFVKGDVHNWKLTEEDYELAMAELNDTYSLGPLGSGGFVPFGFEGILRGAATCFYAFVGFDCIATTGEEAQNPQRSIPMGIVISLSVCFLAYFAVSSALTLMMPYYQLQPESPLPEAFLYIGWAPARYVVAVGSLCALSTSLLGSMFPMPRVIYAMAEDGLLFRVLARIHTGTRTPIIATVVSGIIAAFMAFLFKLTDLVDLMSIGTLLAYSLVSICVLILRYQPDQ----ETKTGEEVELQEEAITTESEKLTLWGLFFPLNSIPTPLSGQIVYVCSSLLAVLLTALCLVLAQWSVPLLSGDLLWTAVVVLLLLLIIGIIVVIWRQPQSSTPLHFKVPALPLLPLMSIFVNIYLMMQMTAGTWARFGVWMLIGFAIYFGYGIQHSLEEIKSNQPSRKSRAKTVD 608

The following BLAST results are available for this feature:

BLAST of TCONS_00018306-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00018306-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CTR3	1.713e-148	42.43	Cationic amino acid transporter 3 OS=Homo sapiens ...	[more]

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TCONS_00018306-protein (polypeptide) - C. hemisphaerica