TCONS_00018156-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018156-protein
Unique NameTCONS_00018156-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length127

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018156-protein ID=TCONS_00018156-protein|Name=TCONS_00018156-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
MKSLALLLVIAIIAQSHARTLRGDCEGVHCQYGGKCKELVYGGFECKCTR
GFAGKFCEIDTNKCKGVHCQNEGKCKTVGNTFKCECRKGYEGKWCEIDTN
KCKGVHCQNGGKCKTVGNTYKCECKKX
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010187XLOC_010187Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018156TCONS_00018156Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
IPR001881EGF-like_Ca-bd_dom
IPR013032EGF-like_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000742EGF-like domainSMARTSM00181egf_5coord: 63..96
e-value: 0.0026
score: 27.0
coord: 24..58
e-value: 0.0095
score: 25.1
IPR000742EGF-like domainPFAMPF00008EGFcoord: 65..93
e-value: 3.1E-5
score: 24.1
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 60..96
score: 17.301
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 98..127
score: 9.815
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 21..58
score: 16.642
IPR001881EGF-like calcium-binding domainSMARTSM00179egfca_6coord: 60..96
e-value: 0.003
score: 22.2
coord: 24..58
e-value: 0.18
score: 7.8
NoneNo IPR availableGENE3D2.10.25.10coord: 101..127
e-value: 6.9E-5
score: 22.6
NoneNo IPR availableGENE3D2.10.25.10coord: 62..100
e-value: 3.1E-10
score: 39.5
NoneNo IPR availableGENE3D2.10.25.10coord: 16..61
e-value: 2.2E-9
score: 36.5
NoneNo IPR availableCDDcd00054EGF_CAcoord: 60..96
e-value: 0.00321929
score: 31.453
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 98..125
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 23..60
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 60..103
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 84..95
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 46..57
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 46..57
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 84..95

Blast
[Close]
BLAST of TCONS_00018156-protein vs. Swiss-Prot (Human)
Match: FAT4 (Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 5.963e-25
Identity = 42/101 (41.58%), Postives = 54/101 (53.47%), Query Frame = 0 
Query:   24 DCEGVHCQYGGKCKELVYGGFECKCTRGFAGKFCEIDTNKCKGVHCQNEGKCKTVGNTFKCECRKGYEGKWCEIDTNKCKGVHCQNGGKCKTVGNTYKCEC 124
            +C    C  GG C  LV GGF C C  GF G+ CE D N+C    C+N   C+    +F C C+ GY GK CE   N C+   C NGG C++  ++Y C C
Sbjct: 3865 ECLPSPCHSGGTCHNLV-GGFSCSCPDGFTGRACERDINECLQSPCKNGAICQNFPGSFNCVCKTGYTGKMCESSVNYCECNPCFNGGSCQSGVDSYYCHC 3964

HSP 2 Score: 82.4185 bits (202), Expect = 2.342e-19
Identity = 32/82 (39.02%), Postives = 45/82 (54.88%), Query Frame = 0 
Query:   44 FECKCTRGFAGKFCEIDTNKCKGVHCQNEGKCKTVGNTFKCECRKGYEGKWCEIDTNKCKGVHCQNGGKCKTVGNTYKCECK 125
            F CKC  G+AG +CEID ++C    C + G C  +   F C C  G+ G+ CE D N+C    C+NG  C+    ++ C CK
Sbjct: 3846 FLCKCLPGYAGSWCEIDIDECLPSPCHSGGTCHNLVGGFSCSCPDGFTGRACERDINECLQSPCKNGAICQNFPGSFNCVCK 3927
The following BLAST results are available for this feature:
BLAST of TCONS_00018156-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FAT45.963e-2541.58Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 S... [more]
back to top