TCONS_00017809-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017809-protein
Unique NameTCONS_00017809-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length437

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017809-protein ID=TCONS_00017809-protein|Name=TCONS_00017809-protein|organism=Clytia hemisphaerica|type=polypeptide|length=437bp
SSGYEIRELQRKRTILGQECMEATNQSTLPAAAVIAVKRNLFTEESNTVE
VNQQNNMATLTQPVLSNTSFSPIKTTMGDTDIINQCVTMAKISKPPSSPT
SAKPTETSTNESPKMNGTLSPKPYTTSQNKPPKIKLLNRSANVASPVADL
NGIEDNNTQDIQEGETQKEKEEAVAVMEPSLETPEDIVKVQQIKIQPDVT
SQTLHRPPQQQTQTQQQAYNVEYSSSPSSTTSSLNRENSLDYKDSTGVDL
HDFMVKTLKENPRDRLMLLKLERDFTEFIEDKNKTGYKYNQMTSYHRMLV
HRVAAYFGLDHNIDNTGKAVVISKTPSSRVPETKFQAYCSREYTDEEISS
PKVILPRSASTDEPGAGTPINSFDSEVVAYSPKHTARSTDSSVLSEKEAA
IAVVAARTGGKPGSTPSVTTKRVKPFELQLQGHQGQG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009983XLOC_009983Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017809TCONS_00017809Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001374R3H_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 6..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..132
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..171
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 406..437
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 199..240
NoneNo IPR availableCDDcd02642R3H_encore_likecoord: 264..325
e-value: 2.29633E-22
score: 88.8137
IPR001374R3H domainSMARTSM00393R3H_4coord: 248..325
e-value: 3.8E-10
score: 49.7
IPR001374R3H domainPFAMPF01424R3Hcoord: 267..322
e-value: 3.9E-10
score: 39.5
IPR001374R3H domainGENE3D3.30.1370.50coord: 255..330
e-value: 5.2E-22
score: 76.9
IPR001374R3H domainPROSITEPS51061R3Hcoord: 265..328
score: 13.478
IPR001374R3H domainSUPERFAMILY82708R3H domaincoord: 238..346

Blast
[Close]
BLAST of TCONS_00017809-protein vs. Swiss-Prot (Human)
Match: R3HD2 (R3H domain-containing protein 2 OS=Homo sapiens GN=R3HDM2 PE=1 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 3.179e-42
Identity = 68/113 (60.18%), Postives = 90/113 (79.65%), Query Frame = 0 
Query:  234 LNRENSLDYKDSTGVDLHDFMVKTLKENPRDRLMLLKLERDFTEFIEDKNKTGYKYNQMTSYHRMLVHRVAAYFGLDHNIDNTGKAVVISKTPSSRVPETKFQAYCSREYTDE 346
            L+R++S +Y DSTG+DLH+F+V TLK+NPRDR+MLLKLE++  EFI D N    K+ QMTSYHRML+HRVAAYFG+DHN+D TGKAV+I+KT ++R+PE +F  +   E   E
Sbjct:  138 LSRDSSQEYTDSTGIDLHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQFKKFPQMTSYHRMLLHRVAAYFGMDHNVDQTGKAVIINKTSNTRIPEQRFSEHIKDEKNTE 250
The following BLAST results are available for this feature:
BLAST of TCONS_00017809-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
R3HD23.179e-4260.18R3H domain-containing protein 2 OS=Homo sapiens GN... [more]
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