TCONS_00017791-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017791-protein
Unique NameTCONS_00017791-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length199

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017791-protein ID=TCONS_00017791-protein|Name=TCONS_00017791-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
FIEIYVFSYILAFESAREIKEHFANLLPMDSPEAQAFYKEFTKRWKPISS
SGTVMQKKHDYLDDFMKPKKDKRKEKKQDPTMIKDTQLPQTYENNNKENN
ILMEDAENLYPSVMSVDVTGAEFLDKNKPMIGEIKMKSCSPFKKKNLKFI
PLFGADGKMKTDTVTLPGRHPCQCLAQKHKLINNCHSCGRIVCEQEGAG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009972XLOC_009972Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017791TCONS_00017791Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009349Znf_C2HC5
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009349Zinc finger, C2HC5-typePFAMPF06221zf-C2HC5coord: 170..197
e-value: 4.3E-6
score: 26.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..94

Blast
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BLAST of TCONS_00017791-protein vs. Swiss-Prot (Human)
Match: TRIP4 (Activating signal cointegrator 1 OS=Homo sapiens GN=TRIP4 PE=1 SV=4)

HSP 1 Score: 90.5077 bits (223), Expect = 3.108e-21
Identity = 68/199 (34.17%), Postives = 90/199 (45.23%), Query Frame = 0 
Query:    6 VFSYILAFESAREIKEHFANLLPMDSPEAQAFYKEFTKRWKP-----ISSSGTVMQKKHDYLDDFMKPKKDKRKEKKQDPTMIKDTQLPQTYENNNKENNILMEDAENLYPSVMSVDVTGAEFLDKNKPMIGEIKMKSCSPFKKKNLKFIPLFGADGKMKTDTVTLPGRHPCQCLAQKHKLINNCHSCGRIVCEQEGAG 199
            +  Y+L+ ESA EI+E+  +LL  +  +   F +E   +W+      IS       KK + LD        KR  KK                  N++            P+    D T AE     K      K +  S   KK  KF+ L+  +G+ +   V LPGRHPC CL QKHKLINNC  CGRIVCEQEG+G
Sbjct:   32 IIQYVLSIESAEEIREYVTDLLQGNEGKKGQFIEELITKWQKNDQELISDPLQQCFKKDEILDGQKSGDHLKRGRKK----------------GRNRQE----------VPAFTEPDTT-AEV----KTPFDLAKAQENSNSVKKKTKFVNLYTREGQDRL-AVLLPGRHPCDCLGQKHKLINNCLICGRIVCEQEGSG 198
The following BLAST results are available for this feature:
BLAST of TCONS_00017791-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRIP43.108e-2134.17Activating signal cointegrator 1 OS=Homo sapiens G... [more]
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