TCONS_00017678-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017678-protein
Unique NameTCONS_00017678-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length545

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017678-protein ID=TCONS_00017678-protein|Name=TCONS_00017678-protein|organism=Clytia hemisphaerica|type=polypeptide|length=545bp
MESLLSCDTGETFKVVHGETLIGRGPFLKVTDSKVSRKHAILKYAEDGEI
SLKPIHKNPTFLYIESTDNWQPLQKDIWHTLQHGSKISLLPNSLKFEVVS
KKQSTVESLKENGSEKKKSENAATAKENKAKEDSQPVEIKLSSTASGKSL
LRTKPLPSKKNAKRQLPSWMLNVSTGGDAKKKTGIKRELKSKKANISTEQ
NDMSKTIGGESSKGRKTSHGLKSPDLSDDEVLPEKKTLANQSPLIDKDAT
KAPLKLARESSFTSSLDTPGSSKRSVLGARVPVQPQPDLSDKLLGLGSYK
PTKKPPITHKKSKESPLTSSEPKESSYKESVDKKDSSFLSQLMDSGSTKS
KRKMNPVENSESRDEESKANDDDEDGKAESKPSQPSSKKPKNEDEDNKLP
RCPYGRQCYRRNPNHFQEYLHDSDHDDDDDDGDKDEDADGDDDERPECQY
GLSCYRQNPLHKKQFKHTKDVSNTTKKKSVLADDSDDDGENNTYDYDDSF
IDDDGDDDDYDDGDNSSDEDFVPPGDDGDEDLSELVSEAKDFIDD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009887XLOC_009887Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017678TCONS_00017678Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019406Znf_C2H2_APLF-like
IPR000253FHA_dom
IPR008984SMAD_FHA_domain
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019406Zinc finger, C2H2, APLF-likePFAMPF10283zf-CCHHcoord: 446..470
e-value: 3.3E-11
score: 42.9
coord: 400..421
e-value: 5.4E-10
score: 39.1
NoneNo IPR availableGENE3D2.60.200.20coord: 1..138
e-value: 1.0E-14
score: 54.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..545
NoneNo IPR availableCDDcd00060FHAcoord: 17..100
e-value: 1.33417E-7
score: 48.5366
IPR000253Forkhead-associated (FHA) domainPFAMPF00498FHAcoord: 22..89
e-value: 6.4E-6
score: 26.3
IPR008984SMAD/FHA domainSUPERFAMILY49879SMAD/FHA domaincoord: 17..100

Blast
[Close]
BLAST of TCONS_00017678-protein vs. Swiss-Prot (Human)
Match: APLF (Aprataxin and PNK-like factor OS=Homo sapiens GN=APLF PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.351e-18
Identity = 68/235 (28.94%), Postives = 109/235 (46.38%), Query Frame = 0 
Query:    8 DTGETFKVVHGETLIGRGPFLKVTDSKVSRKHAILKYAEDGEISLKPIHKNPTFLYIESTDNWQPLQKDIWHTLQHGSKISLLPNSLKFEVVS-----KKQSTVESLKENGSEKKKSENAATAKENKAKEDSQPVEIKLSSTASGKSLLRT-------------KPLPSKKNAKRQLPSWML-------NVS----TGGDAKKKTGIKRELKSKKANISTEQNDMSKTIGGESSK 213
            D G    +  GET+IGRGP L +TD +VSR+HAIL+ A  G++ +KPIH NP F          PL+ ++W  L  G   SLL +   F ++S     + Q T+ + +    +   +E   +   N   E +   +++ S+  +   +  T             K  P     KR LP+WML       N+S    +GG+  + +G K E+   K+ ++T Q    + I   SS+
Sbjct:   11 DGGPRVALAPGETVIGRGPLLGITDKRVSRRHAILEVA-GGQLRIKPIHTNPCFYQSSEKSQLLPLKPNLWCYLNPGDSFSLLVDKYIFRILSIPSEVEMQCTLRNSQVLDEDNILNETPKSPVINLPHETTGASQLEGSTEIAKTQMTPTNSVSFLGENRDCNKQQPILAERKRILPTWMLAEHLSDQNLSVPAISGGNVIQGSG-KEEICKDKSQLNTTQQGRRQLISSGSSE 243
The following BLAST results are available for this feature:
BLAST of TCONS_00017678-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
APLF1.351e-1828.94Aprataxin and PNK-like factor OS=Homo sapiens GN=A... [more]
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