TCONS_00017375-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017375-protein
Unique NameTCONS_00017375-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length196

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017375-protein ID=TCONS_00017375-protein|Name=TCONS_00017375-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
MGKAKKSRKFAAVKRMINPKDQRIKANQEKKEAELKKKEENKVRRVEQSS
SALFFQYNTQLGPPYRVLVDTNFINFSIQHKLDIFQSMVDCLYAKCIPYI
TDCVMAEIEKLGSHYRVALRVAKDPRFERLPCMHKGTYADDCLVNRISQH
KCYIVATCDRDLKRRIRKVPGIPIMYLSKHKYSIERMPDAFGAPKN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009727XLOC_009727Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017375TCONS_00017375Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002716PIN_dom
IPR029060PIN_domain-like
IPR006984Fcf1/Utp23
Vocabulary: Cellular Component
TermDefinition
GO:0032040small-subunit processome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0032040 small-subunit processome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 21..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..40
NoneNo IPR availableCDDcd09864PIN_Fcf1coord: 53..187
e-value: 1.66978E-99
score: 286.057
IPR002716PIN domainSMARTSM00670PIN_9coord: 65..164
e-value: 1.7E-11
score: 54.2
IPR029060PIN domain-likeGENE3D3.40.50.1010coord: 65..189
e-value: 1.3E-22
score: 79.7
IPR029060PIN domain-likeSUPERFAMILY88723PIN domain-likecoord: 63..187
IPR006984rRNA-processing protein Fcf1/Utp23PFAMPF04900Fcf1coord: 90..186
e-value: 6.2E-39
score: 132.3

Blast
[Close]
BLAST of TCONS_00017375-protein vs. Swiss-Prot (Human)
Match: FCF1 (rRNA-processing protein FCF1 homolog OS=Homo sapiens GN=FCF1 PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 1.744e-102
Identity = 141/197 (71.57%), Postives = 166/197 (84.26%), Query Frame = 0 
Query:    1 MGKAKKSRKFAAVKRMINPKDQRIKANQEKKEAELKKKEEN--KVRRVEQSSSALFFQYNTQLGPPYRVLVDTNFINFSIQHKLDIFQSMVDCLYAKCIPYITDCVMAEIEKLGSHYRVALRVAKDPRFERLPCMHKGTYADDCLVNRISQHKCYIVATCDRDLKRRIRKVPGIPIMYLSKHKYSIERMPDAFGAPK 195
            MGK KK+RK+A +KRM++ +DQR+K     K  + +KK+ +  K R V Q  S LFFQYNTQLGPPY +LVDTNFINFSI+ KLD+ QSM+DCLYAKCIP ITDCVMAEIEKLG  YRVALR+AKDPRFERLPC HKGTYADDCLV R++QHKCYIVAT DRDLKRRIRK+PG+PIMY+S H+Y+IERMPD +GAP+
Sbjct:    1 MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYISNHRYNIERMPDDYGAPR 197
The following BLAST results are available for this feature:
BLAST of TCONS_00017375-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FCF11.744e-10271.57rRNA-processing protein FCF1 homolog OS=Homo sapie... [more]
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