TCONS_00016732-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016732-protein
Unique NameTCONS_00016732-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length199

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016732-protein ID=TCONS_00016732-protein|Name=TCONS_00016732-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MHDVTDRNELIFRRVRGILNKLTPDNFDKLSYNLLNIGIDKTVLKGIIIL
IYEKAIDESKYCNLYAQLCLRLRHDVPNFDDPVTKTNTFVRLLLSKCQEE
FETRSKASSAFDKKDTDLSPDEKQDKMVAKRKMLGNIKFIGELGKLELLQ
EAILHKCIQQLLAKKKRTSLSEMAEDIECMCQIMSTIXKPKFSGTIVAW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009355XLOC_009355Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016732TCONS_00016732Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003890MIF4G-like_typ-3
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003723RNA binding
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003890MIF4G-like, type 3SMARTSM00543if4_15coord: 12..191
e-value: 2.6E-18
score: 76.8
IPR003890MIF4G-like, type 3PFAMPF02854MIF4Gcoord: 13..189
e-value: 2.2E-38
score: 131.9
NoneNo IPR availableGENE3D1.25.40.180coord: 2..190
e-value: 1.3E-44
score: 151.8
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 7..187

Blast
[Close]
BLAST of TCONS_00016732-protein vs. Swiss-Prot (Human)
Match: IF4G2 (Eukaryotic translation initiation factor 4 gamma 2 OS=Homo sapiens GN=EIF4G2 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.371e-65
Identity = 108/190 (56.84%), Postives = 145/190 (76.32%), Query Frame = 0 
Query:    6 DRNELIFRRVRGILNKLTPDNFDKLSYNLLNIGID-KTVLKGIIILIYEKAIDESKYCNLYAQLCLRLRHDVPNFDDPVT-------KTNTFVRLLLSKCQEEFETRSKASSAFDKKDTDLSPDEKQDKMVAKRKMLGNIKFIGELGKLELLQEAILHKCIQQLLAKKKRTSLSEMAEDIECMCQIMSTI 187
            +R++ IFR+VRGILNKLTP+ FDKL   LLN+G++ K +LKG+I+LI +KA++E KY +LYAQLCLRL  D PNFD P         ++ TF RLL+SK Q+EFE R++    +DK++  L P+E++ + +AK KMLGNIKFIGELGKL+L+ E+ILHKCI+ LL KKKR  L +M ED+EC+CQIM T+
Sbjct:   72 ERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESKLILKGVILLIVDKALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYDKRENPLLPEEEEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTV 261
The following BLAST results are available for this feature:
BLAST of TCONS_00016732-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF4G21.371e-6556.84Eukaryotic translation initiation factor 4 gamma 2... [more]
back to top