TCONS_00016474-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00016474-protein
Unique Name	TCONS_00016474-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	357

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00016474-protein ID=TCONS_00016474-protein|Name=TCONS_00016474-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
MYSDSYDEDDDAPYDDVPVSLVPCSNCGRKFNSDSLARHENVCSNLKPRK
VFDSSKQRTEGLEKPKVTRSDPPKKAPRKKDWRRQHDEFIKNIRAARGVK
KALETGGELPPPPEPSYNPDYVQCQHCNRRFNESAAERHIKFCKEQKSRL
PKAPSDSKFSQKSEKQKIRTQYRPPVPGQKKSSTSSPAKPRGSASDMRSP
AVKKGSATKVKKVEDDERPIPQTNGRYNQKDYTDSPSTAKSKHNKNTDPD
WMVDLKRGSSAKKTSAKSQRSGHNLNDNDSGVDINENNDRRRRTAEREAD
LFGQKKDRHPSAGRRVTSSNKGSSNKLANFCHDCGTKYPVVEAKFCCECG
LRRMAIT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_009201	XLOC_009201	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00016474	TCONS_00016474	Clytia hemisphaerica	transcript

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13913	zf-C2HC_2	coord: 122..144 e-value: 6.9E-6 score: 25.7 coord: 21..44 e-value: 1.6E-11 score: 43.7
None	No IPR available	GENE3D	3.10.390.10		coord: 102..191 e-value: 2.4E-9 score: 36.9 coord: 11..94 e-value: 3.1E-13 score: 49.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..322

Blast

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BLAST of TCONS_00016474-protein vs. Swiss-Prot (Human)
Match: ZC21A (Zinc finger C2HC domain-containing protein 1A OS=Homo sapiens GN=ZC2HC1A PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 1.011e-50
Identity = 132/342 (38.60%), Postives = 182/342 (53.22%), Query Frame = 0

Query:   21 LVPCSNCGRKFNSDSLARHENVC--SNLKPRKVFDSSKQRTEGLEKPKVTRSDPPKKAPRKK-DWRRQHDEFIKNIRAARGVKKALETGGELPPPPEPSYNPDYVQCQHCNRRFNESAAERHIKFCKEQKSRLPKAPSDSKFSQKSE-KQKIRTQ-YRPPVPGQKKSSTSSPAKPRGSASDMRSPAVKKGSATKVKKVEDDERPIPQTNGRYNQKDYTDSPSTAKSKHNKNTDPDWMVDLKRGSSAKKTSAKSQRSGHNLNDNDSGVDINENNDRRRRTAEREADLFGQKKDRHPSA-GRRVTSSNKGSSNKLANFCHDCGTKYPVVEAKFCCECGLRRMAI 356
            L+PC  CGR F   +L +H  +C  +  K RK FDSS+QR EG + P V    P  + P+K  +WRR+H+EFI  IRAA+G+ +AL+ GG+LPPPP PSY+PDY+QC +C RRFNE+AA+RHI FCKEQ +R+    +  KFS  ++ K   RTQ Y+PP    KKS  +SP      +S +  P+   G+   V  V   +  +  ++     K  T SPS     H     P    ++K  +S   + A++   G   N               +R    E+ +     D   S  G  +      S   L  FCH+CGTKYPV  AKFCCECG+RRM +
Sbjct:   16 LLPCKICGRTFFPVALKKHGPICQKTATKKRKTFDSSRQRAEGTDIPTVKPLKPRPEPPKKPSNWRRKHEEFIATIRAAKGLDQALKEGGKLPPPPPPSYDPDYIQCPYCQRRFNENAADRHINFCKEQAARI---SNKGKFSTDTKGKPTSRTQVYKPPA--LKKS--NSPGTASSGSSRLPQPS---GAGKTVVGVPSGK--VSSSSSSLGNKLQTLSPS-----HKGIAAPHAGANVKPRNSTPPSLARNPAPGVLTN---------------KRKTYTESYIARPDGDCASSLNGGNIKGIEGHSPGNLPKFCHECGTKYPVEWAKFCCECGIRRMIL 325

The following BLAST results are available for this feature:

BLAST of TCONS_00016474-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00016474-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ZC21A	1.011e-50	38.60	Zinc finger C2HC domain-containing protein 1A OS=H...	[more]

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TCONS_00016474-protein (polypeptide) - C. hemisphaerica