TCONS_00016346-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00016346-protein
Unique Name	TCONS_00016346-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	877

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00016346-protein ID=TCONS_00016346-protein|Name=TCONS_00016346-protein|organism=Clytia hemisphaerica|type=polypeptide|length=877bp
MACGCLTSWNRLCGKFHTCLGNLFEKWGRFVYKRPALVLVVSLVTSFALM
AGFLKYSVYGQAERLFYPQNSFVFKSLDRVKDSFNYYIQNEEFILIRNDG
RNILNSETFKMAHKLHKDILQIKGFDSYCLEQPRTNSCVSINPFDGIFHQ
DNFQNVSQTLFKALTSDSTIMGNGLSPKRNFPQMFGKFNTDITQQKLDSN
VIRISYPVHFSQTRTKYEQNSKIEKSIIDYLKSKEKELSLEGISLAYNTV
RGLDDSISQNTKDNVSLIGASIFSMILFCTLGMINLQAKIKSHILVSLAG
ILAVLFGIGAGFGLGLLIGQPYVGFIGVLPFLVLGIGIDDMFIIMHHLDR
VPMEIKGPDRLGMALKHAGLSILMTTLTDLVAFMVGAVSMFPAVKIFCIF
AFLSILFAFLMILTFFLALVSYDIRRIGANRWDCLPCFHGDEKSEELMLK
KENKDTCFSKVMKAYGNFLMNKFVKIGVVIFAVILLIMGIYGTIHTSLDF
DYKVSGSAKSSYVNWLQTLESNFPFGVFQMDVVLDDPNVNYTDPKIQQIF
KTLDTFPVSKVPELNTSLTVNWMTAYMQWSEAQSLSISGDSFYKNLPTFL
NQFKDFRIDIVQDTETGRISASRIHFFTKDRWSLVFRRDALVNLREACDS
LPIPLYPVSFTFIYVSHLIVIIKATLTNVAICAAVILSITLPFVVNPKVS
LIHFLTFISFLIELLGMMYLWDLSLNSITMLVLVMAVGFAVDYSCHIVHA
YLVSKETGPDEQMKDAISNIGSSILKGALSTLIGILVLSISSSKLFRLFF
KMVFSIILLGLIHGMIILPVILTWFVKNTPSYENQTAEKEFLRNGDGRES
KKQLLKENGQNGGIHMNGGHNGGVVQV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_009128	XLOC_009128	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00016346	TCONS_00016346	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003392	Ptc/Disp
IPR000731	SSD

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1640.10		coord: 637..839 e-value: 6.4E-27 score: 93.7 coord: 213..433 e-value: 9.4E-34 score: 116.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 858..877
None	No IPR available	SUPERFAMILY	82866	Multidrug efflux transporter AcrB transmembrane domain	coord: 644..826
None	No IPR available	SUPERFAMILY	82866	Multidrug efflux transporter AcrB transmembrane domain	coord: 259..423
IPR003392	Protein patched/dispatched	PFAM	PF02460	Patched	coord: 183..826 e-value: 3.6E-95 score: 319.7
IPR000731	Sterol-sensing domain	PROSITE	PS50156	SSD	coord: 264..422 score: 35.616
IPR000731	Sterol-sensing domain	PROSITE	PS50156	SSD	coord: 667..824 score: 9.463

Blast

[Close]

BLAST of TCONS_00016346-protein vs. Swiss-Prot (Human)
Match: NPC1 (Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 3.470e-26
Identity = 99/417 (23.74%), Postives = 198/417 (47.48%), Query Frame = 0

Query:  194 QQKLDSNVIRISYPVH-FSQTRTKYEQNSKIEKSIIDYLKSKEKELSLEGISLAYNTVRGLDDSISQNTKDNVSLIGASIFSMILFCTLGMINLQAK----IKSHILVSLAGILAVLFGIGAGFGLGLLIGQPYVGF-IGVLPFLVLGIGIDDMFIIMHHLDRVPMEIKGP---DRLGMALKHAGLSILMTTLTDLVAFMVGAVSMFPAVKIFCIFAFLSILFAFLMILTFFLALVSYDIRRIGANRWDCLPCFHGDEKSEELMLKKENKDTCFSKVMK-AYGNFLMNKFVKIGVVIFAVILLIMGIYGTIHTSLDFDYKVSGSAKSSYVNWLQTLESNFPFGVFQMDVVLDDPNVNYTDPK----------------IQQIFKTLDTFPVSKVPELNTSLTVNWMTAYMQWSEAQS 584
            Q   ++  + I++PV+ +     K ++    EK  I+++K+ +       +++++   R ++D +++ +  +V  +  S   M L+ +L + ++++     + S + + +AGIL VL  +    G+   IG P     I V+PFLVL +G+D++FI++    R    ++G     +LG  L     S+ +++ ++ VAF +GA+S+ PAV  F +FA L++   FL+ +T F++L+  DI+R   NR D   C  G E    +    +  ++C  +  K +Y   L+  +++  V+   V +L   I       +  D  +S    S  V++ +++      G   +  VL++ + +YT  K                +QQIF        +++    +S    W+  Y  W + QS
Sbjct:  553 QNYNNATALVITFPVNNYYNDTEKLQRAQAWEKEFINFVKNYKNP----NLTISFTAERSIEDELNRESDSDVFTVVISYAIMFLYISLALGHMKSCRRLLVDSKVSLGIAGILIVLSSVACSLGVFSYIGLPLTLIVIEVIPFLVLAVGVDNIFILVQAYQR-DERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGALSVMPAVHTFSLFAGLAVFIDFLLQITCFVSLLGLDIKRQEKNRLDIFCCVRGAEDGTSV----QASESCLFRFFKNSYSPLLLKDWMRPIVIAIFVGVLSFSIAVLNKVDIGLDQSLSMPDDSYMVDYFKSISQYLHAGP-PVYFVLEEGH-DYTSSKGQNMVCGGMGCNNDSLVQQIFNAAQLDNYTRIGFAPSS----WIDDYFDWVKPQS 954

HSP 2 Score: 105.916 bits (263), Expect = 3.759e-23
Identity = 58/198 (29.29%), Postives = 117/198 (59.09%), Query Frame = 0

Query:  655 LYPVSFTFIYVSHLIVIIKATLTNVAICAAVILSITLPFV-VNPKVSLIHFLTFISFLIELLGMMYLWDLSLNSITMLVLVMAVGFAVDYSCHIVHAYLVSKETGPDEQMKDAISNIGSSILKG-ALSTLIGILVLSISSSKLFRLF-FKMVFSIILLGLIHGMIILPVILTWFVKNTPSYENQTAEKEFLRNGDGRE 849
            ++P S  +++    + II  T+ N+ +    I  +T+  +      ++I   T    L+ + G+M+LW +SLN+++++ LVM+ G +V++  HI  A+ VS +    E+ ++A++++GSS+  G  L+   GI+VL+ + S++F++F F+M  +++LLG  HG+I LPV+L++   +    ++   E+ +   G  RE
Sbjct: 1078 VFPYSVFYVFYEQYLTIIDDTIFNLGVSLGAIFLVTMVLLGCELWSAVIMCATIAMVLVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQIFQIFYFRMYLAMVLLGATHGLIFLPVLLSYIGPSVNKAKSCATEERY--KGTERE 1273

The following BLAST results are available for this feature:

BLAST of TCONS_00016346-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00016346-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NPC1	3.470e-26	23.74	Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE...	[more]

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TCONS_00016346-protein (polypeptide) - C. hemisphaerica