TCONS_00016308-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016308-protein
Unique NameTCONS_00016308-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length541

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016308-protein ID=TCONS_00016308-protein|Name=TCONS_00016308-protein|organism=Clytia hemisphaerica|type=polypeptide|length=541bp
MSVIPTGYQNEIAGPDKKLFECPICLCIIRKATELPCEHLMCSDCLLHYE
NEEIQRIKRERLNKSATVYRCSICQTPYQRNKKYAVKSVDRIIQRDIPVN
CLQKDCTWTGSLQDYEEHKSICLEKVPCQYFDLGCLELVAQRNLKQHNET
FGDFHQTLILDNVKLLMKERAQDRERIQQLQSQLEKNDRQLGNLSKELKN
QTDRQLNLQKSLEQYNKSLKSIEKEIDDMKIMLKNQTKEYSEKENDRVSR
DKESFMKKLEDHRNQIKKQSNKSQQLEKENANLREKLTSQGKRIQQLEEK
SLNQGKKDLHKSLDVHSKDISELKTFAEQMSSFLHRLSSWEFMKEKFYRF
FRENDYEDDIGLKEWRNFSDKVLSNEENVDCVYLKEMKDAIKGYSHHLYP
GWYTRLNLLANKLDTGVIDRHYHLKLYAPCHFDFISVKAFSDVIGFEKEI
NSYHKWCRYSIDVASYHDSEANCFHVALVCVGVNNIRMFNWFDEAVEIRI
PVNGNIVDLSLFSNHSCVDECRMIFQLKNISPWEKFKVFVG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009098XLOC_009098Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016308TCONS_00016308Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR018957Znf_C3HC4_RING-type
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 163..300
NoneNo IPR availableGENE3D1.20.5.170coord: 159..254
e-value: 0.12
score: 12.0
coord: 255..341
e-value: 0.24
score: 11.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 259..278
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 17..87
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 22..74
e-value: 4.8E-4
score: 29.5
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 22..75
score: 9.45
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 21..49
e-value: 0.00256802
score: 35.114
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 22..51
e-value: 1.9E-5
score: 24.4
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 93..147
e-value: 4.0E-9
score: 36.0
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 6..92
e-value: 1.2E-9
score: 37.0
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 37..46

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016308-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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