TCONS_00016164-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016164-protein
Unique NameTCONS_00016164-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length720

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016164-protein ID=TCONS_00016164-protein|Name=TCONS_00016164-protein|organism=Clytia hemisphaerica|type=polypeptide|length=720bp
MAASSPYSKRVVALVDMDCFYVQVAQRKEPSLRGQPSAVVQYNLWKGGGI
IAVSYEARKFGVTRQMRGDEAKRKCPDIKLFQVPESRGKADLTMFRDAGA
EVIEVLAQFTDCLERASIDEAYMDLTNAINREIQNYSVEEVALSTFKDTH
LVGYDNKNISSELTTDQEITDCDLYKTWHDLLQRDEDSYRMAIGAVIAHR
MRKAVQEKTGFSCSAGVGPNKMLAKIVAGFHKPNQQTMVVMDNVPEMFES
TKMRKIRSLGGKLGQLLEDKFKVEFMSQLVPLSLQELQAVAGVKNGTVVH
GLCRGIDREPVRPRQLAQSVGCSKNFRGKMTLRTRNDVHKWLTNLCEEVH
ERLEKERLNNDRIPTLFTVACTSEDNVTQSRRFFVNKIDLENLRDEAFKA
LCELNASNNPSRQEWTPAIVNLHITTGKFIPLGGSGSRAINTFMQNSATA
VDKHKSPWDTFQTQQPRQSKPNSSLFSTQKTNNSQISNYFSRGNPTLETS
STLTKPPNTQHSKSPPKPKALNSYFSRKETDESKPLTTQLDRSLEEYPIP
GPDLHENSNRVSSKTSDKFNMSTSQFHNMTKPSTSKLSTQKDTIPRTDHT
STIDKLLGKQQQNLNNNSSNTTTTSEDLMICDRCGKRLLAWDLPDHMDFH
FAKDLQDSLKENFFAMCGTGSSKDATTKRKQNSSPTKKPSKRLKAGESSD
SSSNQLSKYFSPVKKKRNEP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009024XLOC_009024Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016164TCONS_00016164Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017961DNA_pol_Y-fam_little_finger
IPR017061DNA_pol_eta/kappa/iota/IV
IPR001126UmuC
Vocabulary: Molecular Function
TermDefinition
GO:0003684damaged DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
molecular_function GO:0003684 damaged DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017961DNA polymerase, Y-family, little finger domainGENE3D3.30.1490.100coord: 314..430
e-value: 1.3E-24
score: 86.3
IPR017961DNA polymerase, Y-family, little finger domainPFAMPF11799IMS_Ccoord: 310..407
e-value: 3.6E-7
score: 30.8
IPR017961DNA polymerase, Y-family, little finger domainSUPERFAMILY100879Lesion bypass DNA polymerase (Y-family), little finger domaincoord: 317..430
NoneNo IPR availableGENE3D3.30.70.270coord: 50..246
e-value: 8.8E-48
score: 162.4
NoneNo IPR availableGENE3D1.10.150.20coord: 247..313
e-value: 2.9E-12
score: 46.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 670..720
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 454..597
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 8..311
IPR017061DNA polymerase eta/kappa/iota/IVPIRSFPIRSF036603DNA_pol_etacoord: 4..714
e-value: 4.7E-180
score: 598.5
IPR001126UmuC domainPFAMPF00817IMScoord: 15..228
e-value: 1.4E-46
score: 158.1
IPR001126UmuC domainPROSITEPS50173UMUCcoord: 12..260
score: 33.516

Blast
[Close]
BLAST of TCONS_00016164-protein vs. Swiss-Prot (Human)
Match: POLH (DNA polymerase eta OS=Homo sapiens GN=POLH PE=1 SV=1)

HSP 1 Score: 416.001 bits (1068), Expect = 1.324e-135
Identity = 249/678 (36.73%), Postives = 376/678 (55.46%), Query Frame = 0 
Query:   10 RVVALVDMDCFYVQVAQRKEPSLRGQPSAVVQYNLWKGGGIIAVSYEARKFGVTRQMRGDEAKRKCPDIKLFQVPESRGKADLTMFRDAGAEVIEVLAQFTDCLERASIDEAYMDLTNAINREIQNYSVEEVALSTFKDTHLVGYDNKNISSELTTDQEITDCDLYKTWHDLLQRD---EDSYRMAIGAVIAHRMRKAVQEKTGFSCSAGVGPNKMLAKIVAGFHKPNQQTMVVMDNVPEMFESTKMRKIRSLGGKLGQLLEDKFKVEFMSQLVPLSLQELQAVAGVKNGTVVHGLCRGIDREPVRPRQLAQSVGCSKNFRGKMTLRTRNDVHKWLTNLCEEVHERLEKERLNNDRIPTLFTVACTSEDN--VTQSRRFF-VNKIDLENLRDEAFKALCELNASNNPSRQEWTPAIVNLHITTGKFIPLGGSGSRAINTFMQNSATAVDKHKSPWDTFQTQQPRQSKPNSSLFSTQKTNNSQISNYFSRG---NPTLETS-STLTKPPNTQHSKSPPKPKALNSYFSRKETDESKPLTTQLDRSLEEYPIPGPDLHENSNRVSSKTSDKFNMSTSQFHNMTK---------PSTSKLSTQKDTIP---------RTDHTSTIDKLLGKQQQNLNNNSSNTTTTSEDLMICDRCGKRLLAWDLPDHMDFHFAKDLQDSL 659
            RVVALVDMDCF+VQV QR+ P LR +P AVVQY  WKGGGIIAVSYEAR FGVTR M  D+AK+ CPD+ L QV ESRGKA+LT +R+A  EV+E++++F   +ERASIDEAY+DLT+A+   +Q    + ++      T++ G      ++E T  +E         W D LQ D       ++ +GAVI   MR A++ +TGF CSAG+  NK+LAK+  G +KPN+QT+V   +VP++F    +RKIRSLGGKLG  + +   +E+M +L   +  +LQ+  G KNG+ ++ +CRGI+ +PV+PRQL +++GCSKNF GK  L TR  V  WL  L +E+ ERL K+R +NDR+ T   V+   + +  ++  RR   + + D   +  +AF  +   N S    + EW+P +  L +   KF     S S  I +F+ +  +++ K        +TQ    S P  ++ +T+K   S + ++F +        E S S+LT P     S SP KP   +  F   ++  ++P   Q    L++  +       N++ VSS   + ++   +  +++              SKL       P         ++ H S+  K + +  Q    N S     +ED + C++CG  +  WD+P+HMD+HFA +LQ S 
Sbjct:    7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKNCNTSG--IQTEWSPPLTMLFLCATKFSASAPSSSTDITSFLSSDPSSLPKVPVTSSEAKTQ---GSGP--AVTATKKATTS-LESFFQKAAERQKVKEASLSSLTAPTQAPMSNSPSKP---SLPFQTSQSTGTEPFFKQKSLLLKQKQL-------NNSSVSSPQQNPWSNCKALPNSLPTEYPGCVPVCEGVSKLEESSKATPAEMDLAHNSQSMHASSASKSVLEVTQKATPNPS--LLAAEDQVPCEKCGSLVPVWDMPEHMDYHFALELQKSF 663
The following BLAST results are available for this feature:
BLAST of TCONS_00016164-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
POLH1.324e-13536.73DNA polymerase eta OS=Homo sapiens GN=POLH PE=1 SV... [more]
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