TCONS_00015898-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00015898-protein
Unique NameTCONS_00015898-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1013

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00015898-protein ID=TCONS_00015898-protein|Name=TCONS_00015898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1013bp
IVKKGRLKMNQQRFQFQGMRTAAPQNNFQRQQQHQQQQLQFQAPQQQFTK
PVVDVAKDIEKLQTDQSRLASLHTKLHKEAEKIRNWKSEKEMELKMKDQN
LVEASGTIENLRKSIIELQFQNEDFGSKLHEKEIEKAETEQKLHTVREMA
NVLRDQMIQLENRVQKGEQDKDDVLEANKKMLNDHQKLVLQFQELDISHA
AAQEKSNNEIKKMEEENESKKNELQSNIRHLENQVINLMQTKTTQEQTIQ
EYKTKQTENEGKIKKLSKELEENHEKLQSAEQVMYCQDQKLNSLNKAYED
LSVESDECKNSLNEYQKKSEELEEMCEKHRTKAEEVQNICTKEINSLRDD
ILQLNGVISSKQTELETCNAEKCQFEEMVTSLQHQMSIDKGEIHELKTEL
LSSQKVVGSLEEKEKQLVSELEQGQVELKGLQERYNEMEKIYDETTEKLH
SIENELKDLQKEKESLVQKLDEADEKLTECQGSDTEKDSLIQQLRDEIAA
SKDEIKSRDAKLNSLGEQLSIQTGHFNKASEDLESLQKQIASLIEKASKS
QAAIEKFKISLDEANKEIECLKETVSSQKGEIERMTAEEQENAEQLKSEL
ANKEKKAEDLGNKTKTMKQDLNDKTKQLKNIEKENKSLKTQLKNKTDKNA
KLQDELDQSNANVTELENKVTETEKVLNECQASLKTTQDNFDMEQKEFCS
TLEQYKKENDKIVEGHLNENNQLKQQLEERSANHSQEIENMKVALEEKNG
MIELQNKQVEELQHGLTEKGAQEKKIVQLQQSLQAMTESLSCQEEKTKAV
EQELQETIEKLEKETEEKEKLQENNLSLMKQNQDSVVPTTPKAMTPKTPN
MRYSQKREKRVLFAGASANDEESIMDIEQDEEPPKSILKTPTIQPQRLKN
IRFSPKTSPFQQRDEKTPRTPVMRMGRKPSDKGKSQDVLSLVNAHKEAVV
RNEERLSSPSVFKLASNKRASPNIRHSNNNMRNKMKKLQPKKSAKVQGDF
SWFESDKTFGFTE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008881XLOC_008881Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00015898TCONS_00015898Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008827SYCP1
Vocabulary: Cellular Component
TermDefinition
GO:0000795synaptonemal complex
Vocabulary: Biological Process
TermDefinition
GO:0007130synaptonemal complex assembly
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007130 synaptonemal complex assembly
cellular_component GO:0000795 synaptonemal complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 203..241
NoneNo IPR availableCOILSCoilCoilcoord: 526..683
NoneNo IPR availableCOILSCoilCoilcoord: 249..283
NoneNo IPR availableCOILSCoilCoilcoord: 491..511
NoneNo IPR availableCOILSCoilCoilcoord: 291..339
NoneNo IPR availableCOILSCoilCoilcoord: 713..744
NoneNo IPR availableCOILSCoilCoilcoord: 129..177
NoneNo IPR availableCOILSCoilCoilcoord: 776..831
NoneNo IPR availableCOILSCoilCoilcoord: 414..483
NoneNo IPR availableGENE3D1.20.5.730coord: 521..592
e-value: 1.2E-4
score: 21.6
NoneNo IPR availableGENE3D1.20.120.330coord: 380..520
e-value: 6.5E-8
score: 31.8
NoneNo IPR availableGENE3D3.90.20.10coord: 700..837
e-value: 0.1
score: 11.8
NoneNo IPR availableGENE3D1.10.287.850coord: 205..287
e-value: 0.24
score: 11.7
NoneNo IPR availableGENE3D1.20.5.340coord: 31..187
e-value: 0.16
score: 11.2
NoneNo IPR availableGENE3D1.20.5.170coord: 288..379
e-value: 2.9E-5
score: 23.6
coord: 593..691
e-value: 3.0E-5
score: 23.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 204..224
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 575..660
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 813..938
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 950..993
NoneNo IPR availableSUPERFAMILY57997Tropomyosincoord: 362..587
IPR008827Synaptonemal complex protein 1PFAMPF05483SCP-1coord: 68..681
e-value: 5.4E-8
score: 31.2

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015898-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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