TCONS_00015495-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00015495-protein
Unique NameTCONS_00015495-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length424

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00015495-protein ID=TCONS_00015495-protein|Name=TCONS_00015495-protein|organism=Clytia hemisphaerica|type=polypeptide|length=424bp
MADRKRRLDVDGASSSYKKMKEQILQTTPKTSSSFSSIPAKIVSGYKENL
PPLNPMNQKPWSERFRTILKKRLNLPVWEYRDEFIKTCSENQCVVLVGET
GSGKTTQIPQWCLDLVMLGKRKHVCCTQPRRVAAMSVAQRVADEMDCVIG
QEVGYSIRFEDCSSSRTAMKYMTDGMLLREAMTDPLLDRYGVILLDEAHE
RTLATDILMGLIKEVVKQRPDLKVIIMSATLDAGKFQNYFGDAPLLTIPG
RTHPVEIFYTPEPERDYLEAAIRTVVQIHLCEEVEGDLLMFLTGQEEIDE
ACKRIKREVDNLGPEVGDMKIIPLYSTLPPQLQQRIFEAAPPKKANGALG
RKIVVSTNIAETSLTIDGVVFVIDPGFSKQKVYNPRIRVESLLVSAISKA
SAQQRAGRAGRTRPGKCFRWVTFF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008651XLOC_008651Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00015495TCONS_00015495Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
IPR011545DEAD/DEAH_box_helicase_dom
IPR002464DNA/RNA_helicase_DEAH_CS
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 73..258
e-value: 2.6E-33
score: 126.6
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 85..249
score: 20.091
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 296..413
e-value: 2.2E-15
score: 67.1
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 275..412
e-value: 1.3E-11
score: 44.8
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 274..424
score: 12.516
NoneNo IPR availableGENE3D3.40.50.300coord: 252..423
e-value: 5.0E-49
score: 165.6
NoneNo IPR availableGENE3D3.40.50.300coord: 74..234
e-value: 2.5E-33
score: 114.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableCDDcd00079HELICccoord: 256..419
e-value: 7.20376E-10
score: 55.3217
NoneNo IPR availableCDDcd00046DEXDccoord: 94..231
e-value: 2.38846E-34
score: 124.372
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 82..232
e-value: 7.3E-8
score: 32.3
IPR002464DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved sitePROSITEPS00690DEAH_ATP_HELICASEcoord: 191..200
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 67..422

Blast
[Close]
BLAST of TCONS_00015495-protein vs. Swiss-Prot (Human)
Match: DHX15 (Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Homo sapiens GN=DHX15 PE=1 SV=2)

HSP 1 Score: 632.869 bits (1631), Expect = 0.000e+0
Identity = 307/410 (74.88%), Postives = 346/410 (84.39%), Query Frame = 0 
Query:   15 SSYKKMKEQILQTTPKTSSSFSSIPAKIVSGYKENLPPLNPMNQKPWSERFRTILKKRLNLPVWEYRDEFIKTCSENQCVVLVGETGSGKTTQIPQWCLDLV--MLGKRKHVCCTQPRRVAAMSVAQRVADEMDCVIGQEVGYSIRFEDCSSSRTAMKYMTDGMLLREAMTDPLLDRYGVILLDEAHERTLATDILMGLIKEVVKQRPDLKVIIMSATLDAGKFQNYFGDAPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHLCEEVEGDLLMFLTGQEEIDEACKRIKREVDNLGPEVGDMKIIPLYSTLPPQLQQRIFEAAPPKKANGALGRKIVVSTNIAETSLTIDGVVFVIDPGFSKQKVYNPRIRVESLLVSAISKASAQQRAGRAGRTRPGKCFRWVT 422
            +S+         +T  T S+ S+      +G+      +NP    P + R+  ILKKRL LPVWEY+D F      +Q  VLVGETGSGKTTQIPQWC++ +  + G ++ V CTQPRRVAAMSVAQRVADEMD ++GQEVGYSIRFEDCSS++T +KYMTDGMLLREAM DPLL+RYGVI+LDEAHERTLATDILMG++KEVV+QR DLKVI+MSATLDAGKFQ YF + PLLTIPGRTHPVEIFYTPEPERDYLEAAIRTV+QIH+CEE EGDLL+FLTGQEEIDEACKRIKREVD+LGPEVGD+KIIPLYSTLPPQ QQRIFE  PPKK NGA+GRK+VVSTNIAETSLTIDGVVFVIDPGF+KQKVYNPRIRVESLLV+AISKASAQQRAGRAGRTRPGKCFR  T
Sbjct:   79 ASHSAHSTHSAHSTHSTHSAHSTHAGH--AGHTSLPQCINPFTNLPHTPRYYDILKKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWCVEYMRSLPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSATLDAGKFQIYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEEEGDLLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQQQRIFEPPPPKKQNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCFRLYT 486
The following BLAST results are available for this feature:
BLAST of TCONS_00015495-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DHX150.000e+074.88Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
back to top