TCONS_00015458-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00015458-protein
Unique NameTCONS_00015458-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length574

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00015458-protein ID=TCONS_00015458-protein|Name=TCONS_00015458-protein|organism=Clytia hemisphaerica|type=polypeptide|length=574bp
MEQTKKKKSRDAARQRRGQQNDEFSELAAQLPLTLPPSEKLDRLCAMRLS
NSFIKIKHVLQQIKDTNLMDKEFTDNLFNAHIQNALGGFIFVLSEDGQVL
YISPNVSENLGLQQLDITGNSAYKYVHPCDQENLAKQLGGQVPLEDMEIF
DGLYCSDTSSYVKNPKQASCAELESTPHRSFSLRMKSTLTSRGKSVNINA
SIYRVVHCVGTIQTYRTKLGTSNGAMTRCLLAIGSPLLSSESFEVPADGQ
TFVTKHSLDLKVTEAEDLASDLLGYKCRAMVNTSWYLYSHMCDTKVIKEC
HESALKKGQAVSGYYRVLLKDGGWIWMQTKANVVYQSSTGQPQFISCVHY
VISGMELGEEILSIEQLSTFKLNQKKRQQSTKREAPTTTFKKFSKSVIHK
KEVAPVPFKAIPCEQIPEAIFSETDLPEDPDMPGLEFLDVEEQLQSFQPE
LDSRSPFIPGPFSDYDLKSRDINTLLADIDENELIDRAPYIPPPCIDKIV
SFDDLSLPDLTDNYQDALQDSPPLQEEMAGNTAALMDPVDFNGQMFDYGN
AKVPAHLLKKFMPMMSGGAKNDFA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008629XLOC_008629Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00015458TCONS_00015458Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001067Nuc_translocat
IPR000014PAS
IPR001610PAC
IPR013767PAS_fold
IPR013655PAS_fold_3
IPR011598bHLH_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
GO:0005667transcription factor complex
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0005515protein binding
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0005515 protein binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001067Nuclear translocatorPRINTSPR00785NCTRNSLOCATRcoord: 92..111
score: 35.28
coord: 203..222
score: 27.22
coord: 228..244
score: 32.35
coord: 124..142
score: 34.5
coord: 251..268
score: 22.22
coord: 39..59
score: 27.51
IPR000014PAS domainSMARTSM00091pas_2coord: 77..143
e-value: 8.4E-8
score: 41.9
coord: 240..306
e-value: 0.25
score: 20.4
IPR000014PAS domainPROSITEPS50112PAScoord: 74..138
score: 14.481
IPR000014PAS domainCDDcd00130PAScoord: 86..138
e-value: 3.24304E-8
score: 50.7095
IPR000014PAS domainCDDcd00130PAScoord: 251..349
e-value: 2.10356E-12
score: 63.0359
IPR000014PAS domainSUPERFAMILY55785PYP-like sensor domain (PAS domain)coord: 87..137
IPR000014PAS domainSUPERFAMILY55785PYP-like sensor domain (PAS domain)coord: 252..353
IPR001610PAC motifSMARTSM00086pac_2coord: 312..355
e-value: 2.4E-6
score: 37.1
IPR013767PAS foldPFAMPF00989PAScoord: 80..137
e-value: 3.0E-8
score: 33.6
NoneNo IPR availableGENE3D3.30.450.20coord: 250..458
e-value: 1.1E-19
score: 70.1
NoneNo IPR availableGENE3D3.30.450.20coord: 70..238
e-value: 1.2E-24
score: 86.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
IPR013655PAS fold-3PFAMPF08447PAS_3coord: 267..349
e-value: 1.3E-16
score: 60.5
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 4..57
score: 10.379
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainCDDcd00083HLHcoord: 2..44
e-value: 3.46261E-5
score: 41.0455
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 5..61

Blast
[Close]
BLAST of TCONS_00015458-protein vs. Swiss-Prot (Human)
Match: HIF1A (Hypoxia-inducible factor 1-alpha OS=Homo sapiens GN=HIF1A PE=1 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.500e-75
Identity = 136/372 (36.56%), Postives = 217/372 (58.33%), Query Frame = 0 
Query:    3 QTKKKKSRDAARQRRGQQNDEFSELAAQLPLTLPPSEKLDRLCAMRLSNSFIKIKHVLQQIKDTNLMDKEFTDNL---FNAHIQNALGGFIFVLSEDGQVLYISPNVSENLGLQQLDITGNSAYKYVHPCDQENLAKQLGGQVPLEDMEIFDGLYCSDTSSYVKNPKQASCAELESTPHRSFSLRMKSTLTSRGKSVNINASIYRVVHCVGTIQTYRT-----KLGTSNGAMTRCLLAIGSPLLSSESFEVPADGQTFVTKHSLDLKVTEAEDLASDLLGYKCRAMVNTSWYLYSHMCDTKVIKECHESALKKGQAVSGYYRVLLKDGGWIWMQTKANVVYQSSTGQPQFISCVHYVISGMELGEEILSIEQ 366
            + +K+KSRDAAR RR ++++ F ELA QLPL    S  LD+   MRL+ S+++++ +L      +  D +  D++    N     AL GF+ VL++DG ++YIS NV++ +GL Q ++TG+S + + HPCD E + + L  +         +GL        VK  K       E    RSF LRMK TLTSRG+++NI ++ ++V+HC G I  Y T     + G     MT CL+ I  P+    + E+P D +TF+++HSLD+K +  ++  ++L+GY+   ++  S Y Y H  D+  + + H     KGQ  +G YR+L K GG++W++T+A V+Y +   QPQ I CV+YV+SG+   + I S++Q
Sbjct:   16 ERRKEKSRDAARSRRSKESEVFYELAHQLPLPHNVSSHLDKASVMRLTISYLRVRKLL------DAGDLDIEDDMKAQMNCFYLKALDGFVMVLTDDGDMIYISDNVNKYMGLTQFELTGHSVFDFTHPCDHEEMREMLTHR---------NGL--------VKKGK-------EQNTQRSFFLRMKCTLTSRGRTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMT-CLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQ 356
The following BLAST results are available for this feature:
BLAST of TCONS_00015458-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HIF1A1.500e-7536.56Hypoxia-inducible factor 1-alpha OS=Homo sapiens G... [more]
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