TCONS_00015445-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00015445-protein
Unique Name	TCONS_00015445-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	481

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00015445-protein ID=TCONS_00015445-protein|Name=TCONS_00015445-protein|organism=Clytia hemisphaerica|type=polypeptide|length=481bp
MKLVLLLSICIAAALTADQIYAVPRGAQVRLTHRGMSYSASIGVKKLQQE
LTNKRLPTASGGSGGFSYSASNLLLRTVRVGGYNVQPVAGNGGLSLSMSG
IYVSASARIQVKYQKGWVKLSDTRNVDIKTSGVGFTLRINIGAQSGKPQL
NVASCSASIGDIDLDFSGNLGFLFNGIAKLFEGKIKDILRKVICDEGRKL
VNNEANGFLRGFPVQQNIENYAIINYAFQSPISTSSYIDFLLRGEFLDPK
NPVHSKVTPPTFDTVTSSAKMAYVWITDYTLNTAGDVFHKTGLLKKLVGP
LTKEIPKDVKPFLNTKSFEKFIPELFKRFPNRPLEFEIQTNKAPSFSISP
GNIGISIDVRVKVVVDKVDGSKLPVFYLDLTVDAKGSVFVKSVNKQLNVG
GNIVDFTFGLSVGGSVIGEVNLPIDDPSVKMLVKGLIIENANPLLNKGFP
IPKVDDLDFINPQVSFVKNAIRVDTDINYSG

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_008623	XLOC_008623	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00015445	TCONS_00015445	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001124	Lipid-bd_serum_glycop_C
IPR017942	Lipid-bd_serum_glycop_N
IPR017943	Bactericidal_perm-incr_a/b_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0008289	lipid binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008289	lipid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001124	Lipid-binding serum glycoprotein, C-terminal	SMART	SM00329	bpi2_2	coord: 266..475 e-value: 1.2E-24 score: 97.9
IPR001124	Lipid-binding serum glycoprotein, C-terminal	PFAM	PF02886	LBP_BPI_CETP_C	coord: 237..479 e-value: 1.1E-36 score: 126.5
IPR017942	Lipid-binding serum glycoprotein, N-terminal	SMART	SM00328	bpi1_3	coord: 30..251 e-value: 8.4E-21 score: 85.1
IPR017942	Lipid-binding serum glycoprotein, N-terminal	PFAM	PF01273	LBP_BPI_CETP	coord: 36..195 e-value: 3.4E-19 score: 69.0
None	No IPR available	GENE3D	3.15.20.10		coord: 209..480 e-value: 1.4E-52 score: 178.1
None	No IPR available	GENE3D	3.15.10.10		coord: 34..208 e-value: 4.3E-31 score: 107.8
IPR017943	Bactericidal permeability-increasing protein, alpha/beta domain	SUPERFAMILY	55394	Bactericidal permeability-increasing protein, BPI	coord: 25..231
IPR017943	Bactericidal permeability-increasing protein, alpha/beta domain	SUPERFAMILY	55394	Bactericidal permeability-increasing protein, BPI	coord: 236..479

Blast

[Close]

BLAST of TCONS_00015445-protein vs. Swiss-Prot (Human)
Match: LBP (Lipopolysaccharide-binding protein OS=Homo sapiens GN=LBP PE=1 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 9.655e-45
Identity = 117/465 (25.16%), Postives = 218/465 (46.88%), Query Frame = 0

Query:   26 GAQVRLTHRGMSYSASIGVKKLQQELTNKRLPTASG-------GSGGFSYSASNLLLRTVRVGGYNVQPVAGNGGLSLSMSGIYVSASARIQVKY--QKGWVKLSDTRNVDIKTSGVGFTLRINIGAQS-GKPQLNVASCSASIGDIDLDFSGNLGFLFNGIAKLFEGKIKDILRKVICDEGRKLVNNEANGFLRGFPVQQNIENYAIINYAF-QSPISTSSYIDFLLRGEFLDPKNPVHSKVTPPTFDTVTSSAKMAYVWITDYTLNTAGDVFHKTGLLKKLVGPLTKEIPKDVKPFLNTKSFEKFIPELFKRFPNRPLEFEIQTNKAPSFSISPGNIGISIDVRVKVVVDKVDGSKLPVFYLDLTVDAKGSVFVKSVNKQLNVGGNIVDFTFGLSVGGSVIGEVNLPIDDPSVKMLVKGLIIENANPLLNKGFPIPKVDDLDFINPQVSFVKNAIRVDTDINY 479
            G   R+T +G+ Y+A  G+  LQ EL    LP  +G       G G + + + N+   +  +    ++PV G G            +S R+Q ++  +K + KL  + +V +K  G+  ++ + +G++S G+P +  +SCS+ I D+++D SG+LG+L N      E K + +L   IC+  +K V+++   +L+  PV   I+++A I+Y+  ++P +T+  ++ + +GE     +     +            KM Y  I+DY  NTA  V+H+ G L   +      IP D    L TKSF  F+P L + +PN  LE +     AP  + SPGN+ +   + +   V     SK PVF L +  +   ++   +      + G +      + +  S +G  N  + +  +   +        N  L +GFP+P +  +   +  +   K+ + +  ++ Y
Sbjct:   29 GLVARITDKGLQYAAQEGLLALQSELLRITLPDFTGDLRIPHVGRGRYEFHSLNI--HSCELLHSALRPVPGQGLSLSISD-----SSIRVQGRWKVRKSFFKLQGSFDVSVK--GISISVNLLLGSESSGRPTVTASSCSSDIADVEVDMSGDLGWLLNLFHNQIESKFQKVLESRICEMIQKSVSSDLQPYLQTLPVTTEIDSFADIDYSLVEAPRATAQMLEVMFKGEIFHRNHRSPVTLLAAVMSLPEEHNKMVYFAISDYVFNTASLVYHEEGYLNFSIT--DDMIPPDSNIRLTTKSFRPFVPRLARLYPNMNLELQGSVPSAPLLNFSPGNLSVDPYMEIDAFVLLPSSSKEPVFRLSVATNVSATLTFNTS----KITGFLKPGKVKVELKESKVGLFNAELLEALLNYYILNTFYPKFNDKLAEGFPLPLLKRVQLYDLGLQIHKDFLFLGANVQY 478

The following BLAST results are available for this feature:

BLAST of TCONS_00015445-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00015445-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LBP	9.655e-45	25.16	Lipopolysaccharide-binding protein OS=Homo sapiens...	[more]

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TCONS_00015445-protein (polypeptide) - C. hemisphaerica