TCONS_00014857-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00014857-protein
Unique NameTCONS_00014857-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length464

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00014857-protein ID=TCONS_00014857-protein|Name=TCONS_00014857-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp
MEELSRNEFINFQILAEQFIKENISKMKDIESKLCQVCRICGDRASGRHY
GVPSCDGCRGFFKRSVRGNAKYKCKYLSSCVVDIKRRNQCQFCRYQRCLS
VGMKKDAVQHERLAHQRHNSTSSTSPDHNNNNELPNIFFPQFSTPTEMSI
KSRLAPHSSSFQSPLSQLTTNTTHPTLIPPFSPSFNTLLPSIIPPPPPST
QKTPSPPKKDAPHQAPPSPVTPLSKNSEQYSIDNLLKDKKETTPPHANHH
PAMLLTPPSSPQYLLYHQMKFNVELEANLMKILEDTIRRVNSVPAFVKMN
KDIRSQLLETSWLPLLLLGLFESNFPVQSFISYLLNTVSQRLSPHEIPHL
HNISVSLERLRQCSVDKIELDLLKLYVLFNPAFETQSLHKDVSINQTQVQ
CLLMEYERKQHPESFSRSAVILSIIRNFQEVPSSLSRVLFPKISDVKNFV
NHIYGNITSLEKSV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008319XLOC_008319Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00014857TCONS_00014857Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001628Znf_hrmn_rcpt
IPR000536Nucl_hrmn_rcpt_lig-bd
IPR013088Znf_NHR/GATA
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0043401steroid hormone mediated signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0043401 steroid hormone mediated signaling pathway
cellular_component GO:0005634 nucleus
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001628Zinc finger, nuclear hormone receptor-typePRINTSPR00047STROIDFINGERcoord: 54..69
score: 53.59
coord: 95..103
score: 52.12
coord: 38..54
score: 56.99
coord: 87..95
score: 58.49
IPR001628Zinc finger, nuclear hormone receptor-typeSMARTSM00399c4goldcoord: 35..106
e-value: 8.6E-32
score: 121.6
IPR001628Zinc finger, nuclear hormone receptor-typePFAMPF00105zf-C4coord: 37..105
e-value: 6.2E-28
score: 97.0
IPR001628Zinc finger, nuclear hormone receptor-typePROSITEPS00031NUCLEAR_REC_DBD_1coord: 38..64
IPR001628Zinc finger, nuclear hormone receptor-typePROSITEPS51030NUCLEAR_REC_DBD_2coord: 32..110
score: 20.103
IPR000536Nuclear hormone receptor, ligand-binding domainPFAMPF00104Hormone_recepcoord: 281..430
e-value: 3.0E-5
score: 23.6
IPR000536Nuclear hormone receptor, ligand-binding domainSUPERFAMILY48508Nuclear receptor ligand-binding domaincoord: 268..440
NoneNo IPR availableGENE3D1.10.565.10coord: 98..449
e-value: 1.5E-20
score: 73.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 111..138
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..228
NoneNo IPR availableCDDcd07164NR_DBD_PNR_like_1coord: 38..113
e-value: 6.26178E-47
score: 157.241
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 35..117
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 30..97
e-value: 3.0E-29
score: 100.5

Blast
[Close]
BLAST of TCONS_00014857-protein vs. Swiss-Prot (Human)
Match: NR2C2 (Nuclear receptor subfamily 2 group C member 2 OS=Homo sapiens GN=NR2C2 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.010e-35
Identity = 125/490 (25.51%), Postives = 208/490 (42.45%), Query Frame = 0 
Query:   12 FQILAEQFIKENISKMKDIES-KLCQVCRICGDRASGRHYGVPSCDGCRGFFKRSVRGNAKYKCKYLSSCVVDIKRRNQCQFCRYQRCLSVGMKKDAVQHER--LAHQRH---NSTSSTSPDHNNNNELPNIFFPQFSTPTEMSIK--------------------------SRLAPHSSSFQSPLSQLTTNTTHPTLIPPFSPSFNTLLPSIIPPPPPS-----------------TQKTPSPPKKDAPHQAPPSPVTPLSKNSEQYSIDNLLKDKKETTPPHANHHPAMLLTPPS-SPQYLLYHQMKFNVELEANLMKILEDTIRRVNSVPAFVKMNKDIRSQLLETSWLPLLLLGLFES------NFPVQSFISYLLNTVSQ-RLSPHEI----PHLHNISVSLERLRQCSVDKIELDLLKLYVLFNPAFETQSLHKDVSINQTQVQCLLMEYERKQHPESFSRSAVILSIIRNFQEVPSSLSRVLF 440
             QI+ +    E +    D++  ++ + C +CGD+ASGRHYG  SC+GC+GFFKRSVR N  Y C+    C+++   RN+CQFCR ++CL +GMK ++VQ ER     QR    N  +ST   +       ++  P  +TPT ++ K                          + L    S  ++    L T     T +   S S N    S I P   S                 T  + SP   D    +    +  +S++     I+          P  ++ H    LT PS  P+YL  H   +  E  + L+ +   ++    S+PAF  + +D  + L+   W  L  LGL +       +  + + +++L N++ + +LS   I     H+  +      + +  +D  E   LK  VLF+P     +    +   Q + Q  L +Y +K + E   R A IL  +   + + S+++  LF
Sbjct:   90 IQIVTDSASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREKPSNCAASTEKIYIRK----DLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLATDSKAETSQGALGTLANVVTSLANLSESLNNGDTSEIQPEDQSASEITRAFDTLAKALNTTDSSSSPSLADGIDTSGGGSIHVISRDQSTPIIE-------VEGPLLSDTHVTFKLTMPSPMPEYLNVH---YICESASRLLFL---SMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELF 562
The following BLAST results are available for this feature:
BLAST of TCONS_00014857-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NR2C29.010e-3525.51Nuclear receptor subfamily 2 group C member 2 OS=H... [more]
back to top