cysteine and glycine-rich protein (polypeptide) - C. hemisphaerica

Overview
Namecysteine and glycine-rich protein
Unique NameTCONS_00014761-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length195

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00014761-protein ID=TCONS_00014761-protein|Name=cysteine and glycine-rich protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MPFKPVAAPKCGRCGKSVYPAEQRLAANCSWHFGGCFTCKICNKTLSSTT
LAEHKESKEIYCKSCYGKHFGPKGYGYGAGAGTLSMDAGANGWTKNNAPL
NENLSSHKYLGGNECGRCGGSVYSAEEILGAGLSWHKGCFTCKDCNKRLD
SKTVSENIDEQDIYCKACYGKHFAPKGYGYGSGAGALKNTGMTPS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008264XLOC_008264Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00014761TCONS_00014761Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 10..65
e-value: 1.1E-9
score: 48.2
coord: 114..168
e-value: 9.8E-10
score: 48.3
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 115..172
e-value: 1.2E-12
score: 47.7
coord: 11..69
e-value: 1.1E-9
score: 38.3
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 115..149
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 9..72
score: 11.939
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 113..175
score: 13.613
NoneNo IPR availableGENE3D2.10.110.10coord: 113..187
e-value: 6.3E-15
score: 54.8
NoneNo IPR availableGENE3D2.10.110.10coord: 6..108
e-value: 1.5E-13
score: 50.3
NoneNo IPR availableCDDcd09326LIM_CRP_likecoord: 11..66
e-value: 2.88076E-20
score: 79.5614
NoneNo IPR availableCDDcd09326LIM_CRP_likecoord: 115..169
e-value: 3.24448E-21
score: 82.2578
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 3..32
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 107..140
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 142..187
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 39..87

Blast
[Close]
BLAST of cysteine and glycine-rich protein vs. Swiss-Prot (Human)
Match: CSRP2 (Cysteine and glycine-rich protein 2 OS=Homo sapiens GN=CSRP2 PE=1 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 2.581e-56
Identity = 101/186 (54.30%), Postives = 121/186 (65.05%), Query Frame = 0 
Query:   10 KCGRCGKSVYPAEQRLAANCSWHFGGCFTCKICNKTLSSTTLAEHKESKEIYCKSCYGKHFGPKGYGYGAGAGTLSMDAGANGWTK------NNAPLNENLS--SHKYLGGNECGRCGGSVYSAEEILGAGLSWHKGCFTCKDCNKRLDSKTVSENIDEQDIYCKACYGKHFAPKGYGYGSGAGAL 187
            KCG CG++VY AE+      S+H   CF C +C K L STT+A H E  EIYCKSCYGK +GPKGYGYG GAGTL+MD G     K      +    N N S  + KY G  +C RCG SVY+AE+I+GAG  WHK CF C  C K L+S T++E   E +IYCK CY K+F PKG+GYG GAGAL
Sbjct:    9 KCGACGRTVYHAEEVQCDGRSFHRC-CFLCMVCRKNLDSTTVAIHDE--EIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESVQPHRPTTNPNTSKFAQKYGGAEKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEK--EGEIYCKGCYAKNFGPKGFGYGQGAGAL 189

HSP 2 Score: 90.5077 bits (223), Expect = 5.948e-23
Identity = 45/77 (58.44%), Postives = 56/77 (72.73%), Query Frame = 0 
Query:  111 GGNECGRCGGSVYSAEEILGAGLSWHKGCFTCKDCNKRLDSKTVSENIDEQDIYCKACYGKHFAPKGYGYGSGAGAL 187
            GGN+CG CG +VY AEE+   G S+H+ CF C  C K LDS TV+  I +++IYCK+CYGK + PKGYGYG GAG L
Sbjct:    6 GGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVA--IHDEEIYCKSCYGKKYGPKGYGYGQGAGTL 80

HSP 3 Score: 82.4185 bits (202), Expect = 9.059e-20
Identity = 45/77 (58.44%), Postives = 51/77 (66.23%), Query Frame = 0 
Query:    8 APKCGRCGKSVYPAEQRLAANCSWHFGGCFTCKICNKTLSSTTLAEHKESKEIYCKSCYGKHFGPKGYGYGAGAGTL 84
            A KC RCG SVY AE+ + A   WH   CF C  C K+L STTL E  +  EIYCK CY K+FGPKG+GYG GAG L
Sbjct:  116 AEKCSRCGDSVYAAEKIIGAGKPWH-KNCFRCAKCGKSLESTTLTE--KEGEIYCKGCYAKNFGPKGFGYGQGAGAL 189
The following BLAST results are available for this feature:
BLAST of cysteine and glycine-rich protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CSRP22.581e-5654.30Cysteine and glycine-rich protein 2 OS=Homo sapien... [more]
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