TCONS_00014614-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00014614-protein
Unique NameTCONS_00014614-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length649

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00014614-protein ID=TCONS_00014614-protein|Name=TCONS_00014614-protein|organism=Clytia hemisphaerica|type=polypeptide|length=649bp
MSTETGSKMRLTLVTLGTTLASLAVIGNAFYQKKQFYPSIVFLTKSSPSI
AVLYAQAFVLVFLFGKAMRKIFFGQLRAAEVEHLIEKFWYVITETCLAFT
VFRDDFSARFVALFTFLLFMKAFHWLLEDRVDYMERSPFIRFIFHVRVIS
LLIVLGTIDSILIHHAFKTTVASGASVQMVFGFEYAILLTMVVATFMKYT
LHVVDYSLDHPWENRNVYLLYGELITGFVKCCLYLAFVVVMVKIHTFPLF
AIRPMYLTIRGFKKSLSDVILSRRAIAYMNTRFQDVNEEELQRLDITTCI
ICRDRLVVGKKLPCNHIFHTHCLRSWFQRQQSCPTCRLDVLTNRRPAETP
NRPGAAQPPPNNAQQPAAPAPGQPPQPPGFMNMPPPQFGMFPQPPMPPQP
PTAPSQAPSTTQSSSNTTTTNTNTAFSSLPPSAFTFPNPSMPSTFPQMPN
QMPGFMPTSSFGMPSFFPPPPPIFNPPSASNMDLSALSVEQLLEMEGQER
ENVEARIRVLRNVHSLLDAVILQLNQYSNVINNLNAMDSPSSPHSPVLPP
HAPQSQTEQKSEEAEEVTSSSKQSEVEQPSTSSTSSTSHNIENIEFSSQL
SNTSDDVLIKPLDEPSSPDNELRRRRLERFESLSKKKNENEDENTQNDS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008180XLOC_008180Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00014614TCONS_00014614Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 299..336
e-value: 9.4E-6
score: 35.1
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 298..337
e-value: 8.3E-10
score: 38.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 299..337
score: 12.357
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 298..340
e-value: 7.0326E-11
score: 57.4556
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 282..649
e-value: 3.8E-17
score: 61.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 535..649
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 345..431
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 298..343

Blast
[Close]
BLAST of TCONS_00014614-protein vs. Swiss-Prot (Human)
Match: SYVN1 (E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1 PE=1 SV=2)

HSP 1 Score: 479.559 bits (1233), Expect = 1.657e-162
Identity = 216/340 (63.53%), Postives = 274/340 (80.59%), Query Frame = 0 
Query:   12 TLVTLGTTLA-SLAVIGNAFYQKKQFYPSIVFLTKSSPSIAVLYAQAFVLVFLFGKAMRKIFFGQLRAAEVEHLIEKFWYVITETCLAFTVFRDDFSARFVALFTFLLFMKAFHWLLEDRVDYMERSPFIRFIFHVRVISLLIVLGTIDSILIHHAFKTTVASGASVQMVFGFEYAILLTMVVATFMKYTLHVVDYSLDHPWENRNVYLLYGELITGFVKCCLYLAFVVVMVKIHTFPLFAIRPMYLTIRGFKKSLSDVILSRRAIAYMNTRFQDVNEEELQRLDITTCIICRDRLVVG-KKLPCNHIFHTHCLRSWFQRQQSCPTCRLDVLTNRRPAET 349
            T V +  +LA + AV+ +A+Y K QFYP++V+LTKSSPS+AVLY QAFVLVFL GK M K+FFGQLRAAE+EHL+E+ WY +TETCLAFTVFRDDFS RFVALFT LLF+K FHWL EDRVD+MERSP I ++FH R++SL+ +LG +D + + HA+ + +  GASVQ+VFGFEYAIL+TMV+  F+KY LH VD   ++PW+N+ VY+LY EL TGF+K  LY+AF+ +M+K+HTFPLFAIRPMYL +R FKK+++D I+SRRAI  MNT + D   EELQ +D   CIICR+ +V G K+LPCNHIFHT CLRSWFQRQQ+CPTCR+DVL    PA++
Sbjct:    4 TAVMMAASLALTGAVVAHAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKVMGKVFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLAEDRVDFMERSPNISWLFHCRIVSLMFLLGILDFLFVSHAYHSILTRGASVQLVFGFEYAILMTMVLTIFIKYVLHSVDLQSENPWDNKAVYMLYTELFTGFIKVLLYMAFMTIMIKVHTFPLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEELQAMD-NVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQS 342
The following BLAST results are available for this feature:
BLAST of TCONS_00014614-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYVN11.657e-16263.53E3 ubiquitin-protein ligase synoviolin OS=Homo sap... [more]
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