TCONS_00014549-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00014549-protein
Unique NameTCONS_00014549-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length579

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00014549-protein ID=TCONS_00014549-protein|Name=TCONS_00014549-protein|organism=Clytia hemisphaerica|type=polypeptide|length=579bp
NQSKGSETFQNFITFNSFCNGLCQRRIAFTHHPLQKTSLYFSFVHVPVCK
YLKIYSTMSENRARSFKNRGKDIDDSRARRSTTSVQLRKAKKDQQILKKR
NVASSMTSPLKENNQQQQTPLLPLEDITTVLLNTINPADDKIYQAVQSAR
RLLSREKNPPIDNVIKAGLVPKLVQLLQYDQNTLIQFEASWAVTNIASGS
SEQTRHVVEAGAVDQFIRLLSSKHEQVCEQSVWALGNIAGDGPTFRDLVI
NKGVIEPLLTLITNTRPCQFLRNVTWTLSNLCRNKNPAPKLETIKPALPA
LCYLVNHSDDDIIADACWALSYLTDGPNEKISIIIETGIVPRLVQLLASS
NVSIITPALRAIGNIVTGDDTQTQQVVDNGALPYLKHLFDHSKSQIVKEA
AWAVSNIAAGNSNQIQAIIDAGLVPLVVEALDKGEFKVRRECVWVITNYT
SGGTTEQVGFLLMNNVIPPLCSMLNVQDLKSVNVALDSINHILLNARRMD
STGDAVDKVTYMIEECGGLDLIEALQTSPQDNVQSTAISIMDTYFECEPL
EDDANVAPTATKDAYQLSTAAAGSSHISL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008152XLOC_008152Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00014549TCONS_00014549Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000225Armadillo
IPR002652Importin-a_IBB
IPR011989ARM-like
IPR024931Importing_su_alpha
IPR032413Arm_3
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008565protein transporter activity
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0006606protein import into nucleus
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006606 protein import into nucleus
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0005488 binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008565 protein transporter activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000225ArmadilloSMARTSM00185arm_5coord: 411..451
e-value: 4.8E-6
score: 36.1
coord: 454..494
e-value: 240.0
score: 2.6
coord: 157..198
e-value: 9.3E-8
score: 41.8
coord: 369..409
e-value: 3.5E-7
score: 39.9
coord: 327..367
e-value: 1.5E-6
score: 37.8
coord: 286..325
e-value: 0.0057
score: 25.9
coord: 242..283
e-value: 3.2
score: 16.7
coord: 200..240
e-value: 7.2E-8
score: 42.1
IPR000225ArmadilloPFAMPF00514Armcoord: 245..283
e-value: 1.2E-8
score: 34.6
coord: 328..366
e-value: 1.3E-8
score: 34.5
coord: 158..198
e-value: 2.1E-10
score: 40.2
coord: 372..409
e-value: 8.7E-9
score: 35.0
coord: 286..324
e-value: 5.0E-6
score: 26.3
coord: 411..450
e-value: 7.1E-7
score: 29.0
coord: 200..239
e-value: 4.9E-13
score: 48.5
IPR000225ArmadilloPROSITEPS50176ARM_REPEATcoord: 338..380
score: 10.832
IPR000225ArmadilloPROSITEPS50176ARM_REPEATcoord: 168..211
score: 10.272
IPR000225ArmadilloPROSITEPS50176ARM_REPEATcoord: 380..422
score: 10.132
IPR000225ArmadilloPROSITEPS50176ARM_REPEATcoord: 211..239
score: 9.047
IPR000225ArmadilloPROSITEPS50176ARM_REPEATcoord: 296..338
score: 8.557
IPR002652Importin-alpha, importin-beta-binding domainPFAMPF01749IBBcoord: 62..127
e-value: 2.7E-15
score: 56.4
IPR002652Importin-alpha, importin-beta-binding domainGENE3D1.20.5.690coord: 62..93
e-value: 2.2E-14
score: 52.3
IPR002652Importin-alpha, importin-beta-binding domainPROSITEPS51214IBBcoord: 46..109
score: 11.206
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 396..556
e-value: 2.6E-18
score: 65.7
IPR024931Importin subunit alphaPIRSFPIRSF005673Importin_alphacoord: 55..576
e-value: 6.0E-190
score: 629.9
NoneNo IPR availableGENE3D1.25.40.150coord: 232..286
e-value: 6.1E-13
score: 48.3
coord: 94..231
e-value: 1.4E-18
score: 66.4
coord: 364..395
e-value: 1.1E-10
score: 41.0
coord: 287..363
e-value: 5.8E-17
score: 61.2
NoneNo IPR availableCDDcd00020ARMcoord: 162..283
e-value: 1.09393E-28
score: 109.711
NoneNo IPR availableCDDcd00020ARMcoord: 297..409
e-value: 1.19763E-29
score: 112.408
NoneNo IPR availableCDDcd00020ARMcoord: 374..492
e-value: 2.75568E-20
score: 86.2143
IPR032413Atypical Arm repeatPFAMPF16186Arm_3coord: 508..558
e-value: 3.3E-13
score: 48.9
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 59..547

Blast
[Close]
BLAST of TCONS_00014549-protein vs. Swiss-Prot (Human)
Match: IMA1 (Importin subunit alpha-1 OS=Homo sapiens GN=KPNA2 PE=1 SV=1)

HSP 1 Score: 527.709 bits (1358), Expect = 0.000e+0
Identity = 264/523 (50.48%), Postives = 362/523 (69.22%), Query Frame = 0 
Query:   62 RARSFKNRGKDIDDSRARRSTTSVQLRKAKKDQQILKKRNVAS---SMTSPLKENNQQQQTPLLPLEDITTVLLNTINPAD-DKIYQAVQSARRLLSREKNPPIDNVIKAGLVPKLVQLLQYDQNTLIQFEASWAVTNIASGSSEQTRHVVEAGAVDQFIRLLSSKHEQVCEQSVWALGNIAGDGPTFRDLVINKGVIEPLLTLIT----NTRPCQFLRNVTWTLSNLCRNKNPAPKLETIKPALPALCYLVNHSDDDIIADACWALSYLTDGPNEKISIIIETGIVPRLVQLLASSNVSIITPALRAIGNIVTGDDTQTQQVVDNGALPYLKHLFDHSKSQIVKEAAWAVSNIAAGNSNQIQAIIDAGLVPLVVEALDKGEFKVRRECVWVITNYTSGGTTEQVGFLLMNNVIPPLCSMLNVQDLKSVNVALDSINHILLNARRMDSTGDAVDKVTYMIEECGGLDLIEALQTSPQDNVQSTAISIMDTYFECEPLEDDANVAPTATKDAY--QLSTAAAGS 574
            R   FKN+GKD  + R RR   +V+LRKAKKD Q+LK+RNV+S     TSPL+EN   Q T    ++DI    +  IN ++ +   QA Q+AR+LLSREK PPIDN+I+AGL+PK V  L     + IQFE++WA+TNIASG+SEQT+ VV+ GA+  FI LL+S H  + EQ+VWALGNIAGDG  FRDLVI  G ++PLL L+     ++  C +LRN+TWTLSNLCRNKNPAP ++ ++  LP L  L++H D +++AD CWA+SYLTDGPNE+I ++++TG+VP+LV+LL +S + I+TPALRAIGNIVTG D QTQ V+D GAL     L  + K+ I KEA W +SNI AG  +QIQ +++ GLVP +V  L K +FK ++E VW +TNYTSGGT EQ+ +L+   +I PL ++L  +D K + V LD+I++I   A ++  T    +K++ MIEECGGLD IEALQ    ++V   ++S+++ YF  E  E+D NV P  T + Y  Q+   A G+
Sbjct:   13 RLHRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVDDI----VKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKLGET----EKLSIMIEECGGLDKIEALQNHENESVYKASLSLIEKYFSVEE-EEDQNVVPETTSEGYTFQVQDGAPGT 526
The following BLAST results are available for this feature:
BLAST of TCONS_00014549-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IMA10.000e+050.48Importin subunit alpha-1 OS=Homo sapiens GN=KPNA2 ... [more]
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