TCONS_00014250-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00014250-protein
Unique Name	TCONS_00014250-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	709

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00014250-protein ID=TCONS_00014250-protein|Name=TCONS_00014250-protein|organism=Clytia hemisphaerica|type=polypeptide|length=709bp
MLSFRRIIRPNTSFLNIKQASKNLYRTLPIRNMASTEDFEKKAQFMELEI
EKLQEQVAKLKRRIDPSIPIEDEDCSKELQEERSKNRKLLYRVNILKRAI
EEEQSKAQNRMLNIKESLTSIFELAIGNAFPELNNAPVVLAIAQNPKFGD
YQCNSAMAISKLVAAQQGTKIAPQEVAKAIVANVAENPIIQKLDIAGPGF
INIHLERKNIYEIVDKILKDKVNPPGVGAKKRVVIDFSSPNIAKQMHVGH
LRSTIIGESLARLLEFVGHDVLRLNHVGDWGTQFGMLIAHLEDEFPNYKE
VVPPIADLQAFYKASKKRFDDDAEFKKRAYQRVVQLQGGDADVRKAWTLI
CEASRKEFQVIYNQLDVSLIERGESFYNDLMPKVVEGMLATGQCEKADDG
RTISFAEGMKVPLILLKSDGGFTYDTSDLAAIRQRLHDEKGDWVIYVVDA
GQGDHFKTLFGVARKLGWYNPTVTRVDHVAFGVVLGEDKKKFKTRSGDTV
RLADLIQEGLKRSMDKLLEKGRDKELTKEELEAAQTSVAYGCIKYADLSH
NRVMDYVFSFDKMLDDKGNTAVYLLYAYTRIRSILRTAKVDEAKLKSYID
NNNIRLDHEKEWKLGKMVSRFPEVIVKCMDDLYLHPLCEYLYELAGTMTE
FYDACYCLTKDKETGDIKSVDMNRIALLEAVSRIFASGFHILGVCKKFER
LYISEVQRG

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_007966	XLOC_007966	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00014250	TCONS_00014250	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001278	Arg-tRNA-ligase
IPR005148	Arg-tRNA-synth_N
IPR008909	DALR_anticod-bd
IPR009080	tRNAsynth_Ia_anticodon-bd
IPR014729	Rossmann-like_a/b/a_fold
IPR001412	aa-tRNA-synth_I_CS

Vocabulary: **Biological Process**
Term	Definition
GO:0006420	arginyl-tRNA aminoacylation
GO:0006418	tRNA aminoacylation for protein translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0004814	arginine-tRNA ligase activity
GO:0005524	ATP binding
GO:0000166	nucleotide binding
GO:0004812	aminoacyl-tRNA ligase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006420	arginyl-tRNA aminoacylation
biological_process	GO:0006418	tRNA aminoacylation for protein translation
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0004812	aminoacyl-tRNA ligase activity
molecular_function	GO:0004814	arginine-tRNA ligase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0000166	nucleotide binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 36..63
None	No IPR available	COILS	Coil	Coil	coord: 97..117
None	No IPR available	COILS	Coil	Coil	coord: 514..534
None	No IPR available	CDD	cd00671	ArgRS_core	coord: 232..497 e-value: 1.57602E-74 score: 240.544
None	No IPR available	SUPERFAMILY	52374	Nucleotidylyl transferase	coord: 227..568
IPR001278	Arginine-tRNA ligase	PRINTS	PR01038	TRNASYNTHARG	coord: 414..435 score: 43.6 coord: 271..284 score: 57.14 coord: 247..263 score: 63.4 coord: 232..247 score: 50.23
IPR001278	Arginine-tRNA ligase	PFAM	PF00750	tRNA-synt_1d	coord: 215..560 e-value: 9.7E-137 score: 455.5
IPR001278	Arginine-tRNA ligase	TIGRFAM	TIGR00456	TIGR00456	coord: 120..694 e-value: 9.4E-134 score: 444.8
IPR001278	Arginine-tRNA ligase	HAMAP	MF_00123	Arg_tRNA_synth	coord: 112..700 score: 23.201
IPR005148	Arginyl tRNA synthetase N-terminal domain	SMART	SM01016	Arg_tRNA_synt_N_2	coord: 116..205 e-value: 2.0E-22 score: 90.5
IPR005148	Arginyl tRNA synthetase N-terminal domain	GENE3D	3.30.1360.70		coord: 83..223 e-value: 6.3E-25 score: 87.9
IPR005148	Arginyl tRNA synthetase N-terminal domain	PFAM	PF03485	Arg_tRNA_synt_N	coord: 118..205 e-value: 1.0E-18 score: 67.6
IPR005148	Arginyl tRNA synthetase N-terminal domain	SUPERFAMILY	55190	Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain	coord: 98..221
IPR008909	DALR anticodon binding	SMART	SM00836	dalr_1_4	coord: 574..701 e-value: 1.9E-25 score: 100.6
IPR008909	DALR anticodon binding	PFAM	PF05746	DALR_1	coord: 574..694 e-value: 3.9E-28 score: 97.9
IPR009080	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	GENE3D	1.10.730.10		coord: 556..697 e-value: 1.4E-34 score: 118.5
IPR009080	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	SUPERFAMILY	47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	coord: 568..694
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	GENE3D	3.40.50.620		coord: 226..555 e-value: 2.6E-52 score: 177.3
IPR001412	Aminoacyl-tRNA synthetase, class I, conserved site	PROSITE	PS00178	AA_TRNA_LIGASE_I	coord: 240..251

Blast

[Close]

BLAST of TCONS_00014250-protein vs. Swiss-Prot (Human)
Match: SYRC (Arginine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=RARS PE=1 SV=2)

HSP 1 Score: 787.719 bits (2033), Expect = 0.000e+0
Identity = 374/619 (60.42%), Postives = 472/619 (76.25%), Query Frame = 0

Query:   76 SKELQEERSKNRKLLYRVNILKRAIEEEQSKAQNRMLNIKESLTSIFELAIGNAFPELNNAPVVLAIAQNPKFGDYQCNSAMAISKLVAAQQGTKIAPQEVAKAIVANVAENPIIQKLDIAGPGFINIHLERKNIYEIVDKILKDKVNPPGVGAKKRVVIDFSSPNIAKQMHVGHLRSTIIGESLARLLEFVGHDVLRLNHVGDWGTQFGMLIAHLEDEFPNYKEVVPPIADLQAFYKASKKRFDDDAEFKKRAYQRVVQLQGGDADVRKAWTLICEASRKEFQVIYNQLDVSLIERGESFYNDLMPKVVEGMLATGQCEKADDGRTISFAEGMKVPLILLKSDGGFTYDTSDLAAIRQRLHDEKGDWVIYVVDAGQGDHFKTLFGVARKLGWYNPTVTRVDHVAFGVVLGEDKKKFKTRSGDTVRLADLIQEGLKRSMDKLLEKGRDKELTKEELEAAQTSVAYGCIKYADLSHNRVMDYVFSFDKMLDDKGNTAVYLLYAYTRIRSILRTAKVDEAKLKSYIDNNNIRLDHEKEWKLGKMVSRFPEVIVKCMDDLYLHPLCEYLYELAGTMTEFYDACYCLTKDKETGDIKSVDMNRIALLEAVSRIFASGFHILGV 694
            S  L++ + +N KL YR+NIL+++++ E++K    M+NI   L  +F  AI  A+P+L N P+++  +Q  KFGDYQCNSAM IS+++  ++  K+ P+E+A+ I  ++ +N  I+K++IAGPGFIN+HL +  + E +  +L + V  P +G  K+V++DFSSPNIAK+MHVGHLRSTIIGES++RL EF G+DVLRLNHVGDWGTQFGMLIAHL+D+FP+Y  V PPI DLQ FYK SKKRFD + EFKKRAYQ VV LQG + D+ KAW LIC+ SR+E   IY+ LDVSLIERGESFY D M  +V+     G  +  DDGR I F  G  +PL ++KSDGG+TYDTSDLAAI+QRL +EK D +IYVVD GQ  HF+T+F  A+ +GWY+P VTRV H  FGVVLGEDKKKFKTRSG+TVRL DL+ EGLKRSMDKL EK RDK LT EEL AAQTSVAYGCIKYADLSHNR+ DY+FSFDKMLDD+GNTA YLLYA+TRIRSI R A +DE  L+       I LDHEKEWKLG+ + RFPE++ K +DDL+LH LC+Y+YELA   TEFYD+CYC+ KD++TG I  V+M R+ L EAV+ + A GF ILG+
Sbjct:   38 SPNLEQLQEENLKLKYRLNILRKSLQAERNKPTKNMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQAKFGDYQCNSAMGISQMLKTKE-QKVNPREIAENITKHLPDNECIEKVEIAGPGFINVHLRKDFVSEQLTSLLVNGVQLPALGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESISRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFYKESKKRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRQELNKIYDALDVSLIERGESFYQDRMNDIVKEFEDRGFVQ-VDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYVVDNGQSVHFQTIFAAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFKTRSGETVRLMDLLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEILQKILDDLFLHTLCDYIYELATAFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAVMAKGFDILGI 654

The following BLAST results are available for this feature:

BLAST of TCONS_00014250-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00014250-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SYRC	0.000e+0	60.42	Arginine--tRNA ligase, cytoplasmic OS=Homo sapiens...	[more]

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TCONS_00014250-protein (polypeptide) - C. hemisphaerica