TCONS_00013882-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00013882-protein
Unique Name	TCONS_00013882-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	503

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00013882-protein ID=TCONS_00013882-protein|Name=TCONS_00013882-protein|organism=Clytia hemisphaerica|type=polypeptide|length=503bp
MPSKTRRAIKDLSIVDTQSKIDFPCRKTRSRTSKKVVDEDVFEKVQPIKT
RKRSTKQTDENASPYKSPRKQNLSPLKSPLADRSNLPCTPTNLIVRRKLD
IDTPVTALSPRSLRQALHTSIPTDLIGRTEEQNLIDSFITKTMKNHQPGS
LYLSGAPGTGKTACLTKALDKLECSTCKKYQSFFINCMSIKSSQNIFTKV
ASELSGNSKTFTAKDALKYLETKCKSQGPRILLILDEIDQLESKNQDVLY
KLFELPFLPKSRLVLIGIANALDLTDRILPRLQSKDTCKPLLLQFSPYSK
DQISEILNSRIKEIGSTEIDPMAVQFCARKVHAITGDIRKALDILRRAVE
IKESAEKKKLRSGELDKPQKVTLAHVASVCSEVYGSRLSSSSKSSNAFPL
QQKLVICSLMVCLRDKKLKEVTTGKLYETYSRVCKSRQMAGVTNEEMSSA
CNLLESQGIITIKKTKDLRNSKITLRLQENEVEHALQDKTLISSILNEHV
KKN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_007750	XLOC_007750	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00013882	TCONS_00013882	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015163	Cdc6_C
IPR003593	AAA+_ATPase
IPR016314	Cdc6/18
IPR011991	WHTH_DNA-bd_dom
IPR027417	P-loop_NTPase

Vocabulary: **Biological Process**
Term	Definition
GO:0051301	cell division
GO:0006270	DNA replication initiation

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0006270	DNA replication initiation

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015163	Cdc6, C-terminal	SMART	SM01074	Cdc6_C_2	coord: 406..486 e-value: 3.8E-16 score: 69.6
IPR015163	Cdc6, C-terminal	PFAM	PF09079	Cdc6_C	coord: 406..485 e-value: 1.3E-17 score: 63.4
IPR015163	Cdc6, C-terminal	CDD	cd08768	Cdc6_C	coord: 399..482 e-value: 2.83429E-15 score: 70.3427
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 147..285 e-value: 8.3E-4 score: 28.7
IPR003593	AAA+ ATPase domain	PFAM	PF13401	AAA_22	coord: 147..266 e-value: 1.9E-12 score: 47.5
IPR016314	Cell division protein Cdc6/18	PIRSF	PIRSF001767	Cdc6	coord: 2..500 e-value: 3.3E-137 score: 456.3
None	No IPR available	GENE3D	1.10.8.60		coord: 288..394 e-value: 3.8E-31 score: 106.9
None	No IPR available	GENE3D	3.40.50.300		coord: 125..287 e-value: 1.2E-15 score: 56.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..87
None	No IPR available	CDD	cd00009	AAA	coord: 137..282 e-value: 2.99099E-8 score: 50.9927
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	1.10.10.10		coord: 398..496 e-value: 3.4E-25 score: 87.6
IPR011991	Winged helix-turn-helix DNA-binding domain	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 396..495
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 119..363

Blast

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BLAST of TCONS_00013882-protein vs. Swiss-Prot (Human)
Match: CDC6 (Cell division control protein 6 homolog OS=Homo sapiens GN=CDC6 PE=1 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 4.281e-120
Identity = 186/394 (47.21%), Postives = 273/394 (69.29%), Query Frame = 0

Query:  116 ALHTSIPTDLIGRTEEQNLIDSFITKTMKNHQPGSLYLSGAPGTGKTACLTKALDKLECSTCKKYQSFFINCMSIKSSQNIFTKVASELSGNSKTFTA-KDALKYLETKCKSQ-GPRILLILDEIDQLESKNQDVLYKLFELPFLPKSRLVLIGIANALDLTDRILPRLQSKDTCKPLLLQFSPYSKDQISEILNSRIKEIGSTEI-DPMAVQFCARKVHAITGDIRKALDILRRAVEIKESAEKKKLRSGELDK---------PQKVTLAHVASVCSEVYGSRLSSSSKSS-NAFPLQQKLVICSLMVCLRDKKLKEVTTGKLYETYSRVCKSRQMAGVTNEEMSSACNLLESQGIITIKKTKDLRNSKITLRLQENEVEHALQDKTLISSIL 496
             L+T++P  L  R  E ++I +F+ + +   + GSLYLSGAPGTGKTACL++ L  L+    K +++  +NCMS++++Q +F  +A E+     +  A KD ++ LE    ++ GP I+L+LDE+DQL+SK QDVLY LFE P+L  S LVLIGIAN LDLTDRILPRLQ+++ CKP LL F PY+++QI  IL  R+ ++   ++ D  AVQFCARKV A++GD+RKALD+ RRA+EI ES  K +     L +         P++V L H++ V SEV G+R++ S + + ++FPLQQK+++CSLM+ +R  K+KEVT GKLYE YS+VC+ +Q+A V   E  S   LLE++GI+ +K+ K+ R +K+  +++E E+EHAL+DK LI +IL
Sbjct:  163 VLNTAVPDRLPAREREMDVIRNFLREHICGKKAGSLYLSGAPGTGKTACLSRILQDLK-KELKGFKTIMLNCMSLRTAQAVFPAIAQEICQEEVSRPAGKDMMRKLEKHMTAEKGPMIVLVLDEMDQLDSKGQDVLYTLFEWPWLSNSHLVLIGIANTLDLTDRILPRLQAREKCKPQLLNFPPYTRNQIVTILQDRLNQVSRDQVLDNAAVQFCARKVSAVSGDVRKALDVCRRAIEIVESDVKSQTILKPLSECKSPSEPLIPKRVGLIHISQVISEVDGNRMTLSQEGAQDSFPLQQKILVCSLMLLIRQLKIKEVTLGKLYEAYSKVCRKQQVAAVDQSECLSLSGLLEARGILGLKRNKETRLTKVFFKIEEKEIEHALKDKALIGNIL 555

The following BLAST results are available for this feature:

BLAST of TCONS_00013882-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00013882-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CDC6	4.281e-120	47.21	Cell division control protein 6 homolog OS=Homo sa...	[more]

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TCONS_00013882-protein (polypeptide) - C. hemisphaerica