TCONS_00013867-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013867-protein
Unique NameTCONS_00013867-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length485

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013867-protein ID=TCONS_00013867-protein|Name=TCONS_00013867-protein|organism=Clytia hemisphaerica|type=polypeptide|length=485bp
MELLKNMGKKTSTATNEIAKPTTSMAKQMSSADDIAAWYEGVQLYDINRI
DEALEVFKNTKQNAKMLLNIGCCYLRKNDLQSASENYEKAVKSDPHSALG
FFFLGLTNYFQDKYRDALSNFQKSQELLRGNKFVDYRQLGFKFQLYSCEI
YTNEAATHHHLGNDESAQASLKQALEMKADKRHERIMVDIQKIAKGKPIQ
LFYPPQSEIFRPAKALVANVEKKDYLGASKVISTDSEEDCYACFSGIKDK
VIEQKKEEQRRKSSAVPPSGLDQIDGGIKQRRLTPSATFDAGSRKSSLTP
NSRQVSFESNSSISPSGTPQRRRSSAKPMPMMPLPVCPGTPPASEERKLS
QTESFVQREGLGRERKASVKPEKPLPKLSRDEPVIEEVALMSPVSHVEVQ
PAFDLTDSGPHSDEVEVILKYCFTRKIRLTSGFTMNDLQANVSRQQLPRQ
FEFRTEDDIGRQSTLNSSSLNTVSQGSVILCYPSE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007746XLOC_007746Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013867TCONS_00013867Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 98..131
e-value: 2.4
score: 17.2
coord: 64..97
e-value: 1.1E-4
score: 31.6
coord: 148..181
e-value: 18.0
score: 12.8
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 149..180
e-value: 0.014
score: 15.4
coord: 64..95
e-value: 8.9E-6
score: 25.4
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 148..181
score: 6.549
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 64..97
score: 11.505
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 98..131
score: 6.903
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 29..266
e-value: 8.0E-25
score: 86.9
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 38..178
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 255..377
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 64..131
score: 16.099
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 148..181
score: 7.61

Blast
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BLAST of TCONS_00013867-protein vs. Swiss-Prot (Human)
Match: NCF2 (Neutrophil cytosol factor 2 OS=Homo sapiens GN=NCF2 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 4.069e-30
Identity = 66/226 (29.20%), Postives = 124/226 (54.87%), Query Frame = 0 
Query:   29 MSSADDIAAWYEGVQLYDINRIDEALEVFKNTKQ-NAKMLLNIGCCYLRKNDLQSASENYEKAVKSDPHSALGFFFLGLTNYFQDKYRDALSNFQKSQELLRGNKFVDYRQLGFKFQLYSCEIYTNEAATHHHLGNDESAQASLKQALEMKADKRHERIMVDIQKIAKGKPIQLFYPPQSEIFRPAKALVANVEKKDYLGASKVISTDSEEDCYACFSGIKDKVIE 253
            MS  + I+ W EGV   D      AL+ F   +  ++++  NIGC Y    ++  A + + +++  D H A+ +F  G+  Y  +KY  A+ + +++   LRGN+ +DY+ LG +F+L++CE+  N A  +      + A+  L  A  MK++ RH +I   ++ + K K  +    P  ++FRP +  VA + KKDYLG + V+++  ++D ++ F+ ++ +  E
Sbjct:    1 MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGKLFRPNERQVAQLAKKDYLGKATVVASVVDQDSFSGFAPLQPQAAE 226
The following BLAST results are available for this feature:
BLAST of TCONS_00013867-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCF24.069e-3029.20Neutrophil cytosol factor 2 OS=Homo sapiens GN=NCF... [more]
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