TCONS_00013521-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013521-protein
Unique NameTCONS_00013521-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length315

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013521-protein ID=TCONS_00013521-protein|Name=TCONS_00013521-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
MSDQEIKTEEAAPAEEAPQAEEKAVDEVKTEEAVEEEVKEEESEDEVEYE
CPEEFNTREEMCKMFVGGLDKTTTDEEFKELFAEHGEIKDFIIIRKENSK
SDRLFGFITFAQCDDLERCLLKRPHNYKSKELDVKRAVPKSSGNDEQGHY
KVKKLHVANLPPDFKVKTLRRYLKARHSEEFGKIEDINFLTKEEGGKTVN
KGFGFINVSTEDFADRIAIGENKFTLDNNALRISKAKPRSQGGFRGGRGG
GNFNNYGNYGGGYNQNQYNQYDGGFGYGGGYGYGGYGGYGGAYGGYGGYA
YQGGRGGGNSRYKPY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007549XLOC_007549Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013521TCONS_00013521Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 154..234
e-value: 1.3E-9
score: 47.9
coord: 63..135
e-value: 3.0E-13
score: 60.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 65..121
e-value: 8.6E-12
score: 44.6
coord: 157..232
e-value: 9.2E-6
score: 25.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 153..238
score: 12.543
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 62..139
score: 13.447
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 148..265
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 59..192
NoneNo IPR availableGENE3D3.30.70.330coord: 149..257
e-value: 4.5E-13
score: 48.8
coord: 3..148
e-value: 8.8E-18
score: 64.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..47
NoneNo IPR availableCDDcd00590RRM_SFcoord: 155..234
e-value: 5.47916E-8
score: 48.0701

Blast
[Close]
BLAST of TCONS_00013521-protein vs. Swiss-Prot (Human)
Match: RA1L2 (Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens GN=HNRNPA1L2 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.677e-25
Identity = 57/183 (31.15%), Postives = 94/183 (51.37%), Query Frame = 0 
Query:   59 EEMCKMFVGGLDKTTTDEEFKELFAEHGEIKDFIIIRKENSKSDRLFGFITFAQCDDLERCLLKRPHNYKSKELDVKRAVPKSSGNDEQGHYKVKKLHVANLPPDFKVKTLRRYLKARHSEEFGKIEDINFLTKEEGGKTVNKGFGFINVSTEDFADRIAIGENKFTLDNNALRISKAKPRSQ 241
            E++ K+F+GGL   TTDE  +  F + G + D +++R  N+K  R FGF+T+A  ++++  +   PH    + ++ KRAV +        H  VKK+ V  +  D +   LR Y      E++GKIE I  +T    GK   +GF F+     D  D+I I +   T+  +   + KA P+ +
Sbjct:   11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF-----EQYGKIEVIEIMTDRGSGK--KRGFAFVTFDDHDSVDKIVI-QKYHTVKGHNCEVRKALPKQE 185
The following BLAST results are available for this feature:
BLAST of TCONS_00013521-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RA1L21.677e-2531.15Heterogeneous nuclear ribonucleoprotein A1-like 2 ... [more]
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