TCONS_00013421-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013421-protein
Unique NameTCONS_00013421-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length464

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013421-protein ID=TCONS_00013421-protein|Name=TCONS_00013421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp
MLTSTSLHATTSNVAYLVNEFQYTRSTLSINHYGDTELQNMAPKPQDEMS
ESDGYDLDELKAADQQKPFRERGKRIRINVSGRIFESYQRTLVSKEGSIF
GYSSIMKYYDEENKEFFFDKDPHTFEAILVYLQCGLLQQPEKVDFKAFIE
DLQFFGFGDKAYHIYRREAIIPDTSCANQGTREEIGFRLFLYNMLEYPDI
NLTAQIFAGLTSFIIFISIIVYCIESLPSMHPNAVDNLSYVEAFCVVWFT
IELSARFILCPEKLKFVKSLMNWVDLVSIVPFYITILMPENKDSNVVGLA
MLRVLRVARVFRVFKLSRYSKAIYLIILTISTSVRELMLLLMFIIILMVL
FAAAIYQFEHDDLDEKNKFKSIPHTFWIVIVTITTVGYGDMVPYTPEGQF
ITSILAITGVVIVALPIPIIVNNFTRFYERIMSKSSKYQFEFDESKSEEN
KETHLVVTQCESTI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007497XLOC_007497Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013421TCONS_00013421Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003972K_chnl_volt-dep_Kv1
IPR028325VG_K_chnl
IPR003968K_chnl_volt-dep_Kv
IPR005821Ion_trans_dom
IPR003131T1-type_BTB
IPR011333SKP1/BTB/POZ
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
GO:0051260protein homooligomerization
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0051260 protein homooligomerization
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003972Potassium channel, voltage dependent, Kv1PRINTSPR01496SHAKERCHANELcoord: 116..126
score: 36.14
coord: 195..211
score: 30.42
coord: 158..169
score: 28.05
coord: 218..229
score: 51.83
IPR028325Voltage-gated potassium channelPRINTSPR00169KCHANNELcoord: 369..391
score: 65.26
coord: 198..226
score: 29.47
coord: 398..424
score: 48.72
coord: 336..359
score: 38.57
coord: 115..134
score: 43.2
coord: 266..286
score: 44.53
coord: 240..263
score: 45.75
coord: 307..333
score: 39.79
IPR003968Potassium channel, voltage dependent, KvPRINTSPR01491KVCHANNELcoord: 312..320
score: 66.2
coord: 336..350
score: 37.0
coord: 115..125
score: 53.79
coord: 409..420
score: 59.24
NoneNo IPR availableGENE3D1.10.287.70coord: 336..388
e-value: 5.9E-15
score: 54.7
NoneNo IPR availableGENE3D1.20.5.110coord: 390..426
e-value: 2.4E-12
score: 45.8
NoneNo IPR availableGENE3D1.20.120.350coord: 201..335
e-value: 4.4E-31
score: 106.9
NoneNo IPR availableGENE3D3.30.710.10coord: 73..171
e-value: 5.8E-16
score: 58.0
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 202..426
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 205..430
e-value: 1.5E-38
score: 132.4
IPR003131Potassium channel tetramerisation-type BTB domainPFAMPF02214BTB_2coord: 76..160
e-value: 2.1E-16
score: 59.9
IPR011333SKP1/BTB/POZ domainSUPERFAMILY54695POZ domaincoord: 75..167

Blast
[Close]
BLAST of TCONS_00013421-protein vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2)

HSP 1 Score: 260.766 bits (665), Expect = 1.423e-81
Identity = 147/430 (34.19%), Postives = 243/430 (56.51%), Query Frame = 0 
Query:   41 MAPKPQDEMSESDGYDLDELKAADQQKPFRERGKRIRINVSGRIFESYQRTLVSKEGSIFGY-SSIMKYYDEENKEFFFDKDPHTFEAILVYLQCG-LLQQPEKVDFKAFIEDLQFFGFGDKAYHIYRR-EAIIPDTSCANQGTREEIGFRLFLYNMLEYPDINLTAQIFAGLTSFIIFISIIVYCIESLPSMHPNA--------VDNLSY-------------VEAFCVVWFTIELSARFILCPEKLKFVKSLMNWVDLVSIVPFYITILMP------ENKDSNVVGLAMLRVLRVARVFRVFKLSRYSKAIYLIILTISTSVRELMLLLMFIIILMVLFAAAIYQFEHDDLDEKNKFKSIPHTFWIVIVTITTVGYGDMVPYTPEGQFITSILAITGVVIVALPIPIIVNNFTRFYERIMSKSSKYQF 440
            M+ +  DE S + G+  D            E  +R+ IN+SG  FE+  +TL     ++ G     M+Y+D    E+FFD++  +F+AIL Y Q G  L++P  V    F E+++F+  G++A   +R  E  I +     +    E  ++  ++ + EYP+ +  A++ A ++  +I ISI+++C+E+LP +  +         +DN +              VE  C++WF+ EL  RF  CP K  F K++MN++D+V+I+P++IT+           K      LA+LRV+R+ RVFR+FKLSR+SK + ++  T+  S+REL LL+ F+ I ++LF++A+Y  E ++ +  + F SIP  FW  +V++TTVGYGDM P T  G+ + S+ AI GV+ +ALP+P+IV+NF  FY R      + Q 
Sbjct:    4 MSGENVDEASAAPGHPQDGSYPRQADHDDHECCERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKE----EERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAEEAE--SHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQL 427
The following BLAST results are available for this feature:
BLAST of TCONS_00013421-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNA11.423e-8134.19Potassium voltage-gated channel subfamily A member... [more]
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