TCONS_00013281-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013281-protein
Unique NameTCONS_00013281-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length114

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013281-protein ID=TCONS_00013281-protein|Name=TCONS_00013281-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MVSLPCGLTTSLYQNEAPRLVIVRQPKKRGYRFRYRSEGETHGGIPGEPD
PHSGNKKFYPTVQLKGHHGAAKIVVTLVTSDDRHFLHAHSMIVNKELKKG
FCIFDMPANSNILE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007420XLOC_007420Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013281TCONS_00013281Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011539RHD_DNA_bind_dom
IPR008967p53-like_TF_DNA-bd
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011539Rel homology domain (RHD), DNA-binding domainPFAMPF00554RHD_DNA_bindcoord: 20..107
e-value: 7.8E-24
score: 84.4
IPR011539Rel homology domain (RHD), DNA-binding domainGENE3D2.60.40.340coord: 9..113
e-value: 4.0E-28
score: 97.9
IPR011539Rel homology domain (RHD), DNA-binding domainPROSITEPS50254REL_2coord: 15..114
score: 29.259
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..57
IPR008967p53-like transcription factor, DNA-bindingSUPERFAMILY49417p53-like transcription factorscoord: 18..109

Blast
[Close]
BLAST of TCONS_00013281-protein vs. Swiss-Prot (Human)
Match: NFKB2 (Nuclear factor NF-kappa-B p100 subunit OS=Homo sapiens GN=NFKB2 PE=1 SV=4)

HSP 1 Score: 80.8777 bits (198), Expect = 4.704e-19
Identity = 46/103 (44.66%), Postives = 59/103 (57.28%), Query Frame = 0 
Query:   16 EAPRLVIVRQPKKRGYRFRYRSEGETHGGIPGEPDPHSGNKKFYPTVQLKGHHGAAKIVVTLVTSDDRHFLHAHSMIVNKELKKGFCIF-----DMPANSNIL 113
            + P LVIV QPK+RG+RFRY  EG +HGG+PG        +K YPTV++  + G AKI V LVT  D    HAHS++  +  + G C       DM A  N L
Sbjct:   36 DGPYLVIVEQPKQRGFRFRYGCEGPSHGGLPGASS--EKGRKTYPTVKICNYEGPAKIEVDLVTHSDPPRAHAHSLVGKQCSELGICAVSVGPKDMTAQFNNL 136
The following BLAST results are available for this feature:
BLAST of TCONS_00013281-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NFKB24.704e-1944.66Nuclear factor NF-kappa-B p100 subunit OS=Homo sap... [more]
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