TCONS_00012976-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00012976-protein
Unique Name	TCONS_00012976-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	717

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00012976-protein ID=TCONS_00012976-protein|Name=TCONS_00012976-protein|organism=Clytia hemisphaerica|type=polypeptide|length=717bp
MPSGRSKEDTWKEDELKQAIRGDSKERKHKSRDKDKETKESKSRDKDRDK
SSKRDKDKDKDRENRKKSRAEGETRDKEKRRNDDEHRSKDKDKERKHRDK
DRDRDKDRERRKEKEWRSDDKDLDRKEKKDRNEEKDDRKQRDRKDRKKSH
KEDDDKENHRDRKDKERSSKHKEGDDREKRKERDGSSKDRDGSSKDRKHR
ESSSKDRKDRESSSKERRDGDGSSKERKDIDGNSKDKRKKSKDSESDLRR
KQREKEKELQRLREIQEIEEKRRKEEEATAAAEYDYEDDFDDYEDDDFES
DVEESEQESEREENESEDEVENKEEDAEEENDVSSASENHSSLQDGIVPQ
QSFLQLTQQEKAGMQELMKAMQVENDKASSSSRSSSGSSSKKSKTKGTPK
FEEKKAHGKINFVAASKKQMSDKVAQKTKKRGEELLGLVQLDVRSIDLFD
MPPMTEYELYMKRFGSSDSRQMYTQTNEENFDQECQTDDIETETRWCQHS
SDSKSAGTQKSSGDSTLENSNAFFNNTDSVRLNKFLLKASKVCLSLLEEI
AAGIEQPRKHYVETRSNLSEGYVSLGSSEFLVLGRDVCDIKYSPSQTNML
LTAHGTSNVVQKGLKSSKGLLCVWNTNDPNKPTRLLVCESVPKSCCFGGV
NTAYAIAGMEDGVIAIWDLTEPTCYHEAAQIGNHMLTFQNVTFTTAALEV
KHIFPVVAITPLTFYSG

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_007278	XLOC_007278	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00012976	TCONS_00012976	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015943	WD40/YVTN_repeat-like_dom
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 241..285
None	No IPR available	COILS	Coil	Coil	coord: 295..333
None	No IPR available	COILS	Coil	Coil	coord: 354..374
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 492..518
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..408
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 482..695 e-value: 7.5E-8 score: 31.1
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 586..680

Blast

[Close]

BLAST of TCONS_00012976-protein vs. Swiss-Prot (Human)
Match: WDR60 (WD repeat-containing protein 60 OS=Homo sapiens GN=WDR60 PE=1 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 3.588e-44
Identity = 110/380 (28.95%), Postives = 178/380 (46.84%), Query Frame = 0

Query:  355 QLTQQEKAGMQELMKAMQVENDKASSSS----------------RSSSGSSSKKSKTKGTPKFEEKKAHGKINFVAASKKQMSDKVAQKTKKRGEELLGLVQLDVR-SIDLFDMPPMTEYELYMKRFGSSDSRQMYTQTNEENFDQECQTDDIETETRWCQHSSDSKSAGTQKSSGDSTLENSNAF-FNNTDSVRLNKFLLKASKVCLSLLEEIAAGIEQPRKHYVETRS-NLSEGYVSLGSSEFLVLGRDVCDIKYSPSQTNMLLTAHGTSNVVQKGLKSSKGLLCVWNTNDPNKPTRLLVCESVPKSCCFGGVNTAYAIAGMEDGVIAIWDLTEPTCYHEAAQIGNHMLTFQNVTFTTAAL--EVKHIFPVVAITPLT 713
            +L   +K  +QE+ +A+  EN++    S                R+ + SS  ++   G            ++F +AS +Q S   A K K R  +LL L+ LD   +  L D+PP+ EY++Y++ FG  +++Q Y Q NE+N +++ QT++IET   W QH  +S    T  S G    + S+A      D+ RL  FL  A +V   LLEE     E       + R+   S+    L +S   +  R V  +  S  Q  M+++ H         L  SK +LCVW+   P+ P ++L+CES    CC   +      AG   G + +WDL E +  H +  + +   TF+  TF+T  +   V H  P+ A+ P++
Sbjct:  407 ELPLAQKKEIQEIQRAINAENERIGELSLKLFQKRGRTEFEKEPRTDTNSSPSRASVCGI----------FVDFASASHRQKSRTQALKQKMRSTKLLRLIDLDFSFTFSLLDLPPVNEYDMYIRNFGKKNTKQAYVQCNEDNVERDIQTEEIETREVWTQHPGES----TVVSGGSEQRDTSDAVVMPKIDTPRLCSFLRAACQVMAVLLEEDRLAAEPSWNLRAQDRALYFSDSSSQLNTSLPFLQNRKVSSLHTSRVQRQMVVSVHDLPEKSFVPLLDSKYVLCVWDIWQPSGPQKVLICESQVTCCCLSPLKAFLLFAGTAHGSVVVWDLREDSRLHYSVTLSDGFWTFRTATFSTDGILTSVNHRSPLQAVEPIS 772

The following BLAST results are available for this feature:

BLAST of TCONS_00012976-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00012976-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
WDR60	3.588e-44	28.95	WD repeat-containing protein 60 OS=Homo sapiens GN...	[more]

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TCONS_00012976-protein (polypeptide) - C. hemisphaerica