TCONS_00012888-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012888-protein
Unique NameTCONS_00012888-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length886

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012888-protein ID=TCONS_00012888-protein|Name=TCONS_00012888-protein|organism=Clytia hemisphaerica|type=polypeptide|length=886bp
MTSNIIISQKLEALHPKPINVWNCSLKSSIVERLSNNNQHNKQRFDLGNG
QIFNDPIHAASYLLQREYGESSIFELDKHDPVFIPPIFTSTKKSFKIEAI
FQDQLKSIANNLQRDQPNYWFTIELKAFVCVIEANKDIGISKAKFGSWIL
NIKIMYLLSDYSKESFVHIESKSTCDVQTFLASCFSYLPLNDTLRYLLEE
LSKEDDVNNVLKMVDNLLGKTSLVEDPALKWLFEMQFSDIRGENIEEWFI
DQLWEMEMNDILREIVILNLANINSGSDKKVKEFDLFIISWSRKLIINVN
VKRKLSENVFEQFEKSHKFLEEQLGDQLGAGWIFFPVVCVGKNIAELSSP
DHHHITMNTCLKTWLENVIKNFPLVQDTESLGQLRNALKFIIFPMHMSKK
YIPSQTKISCWSEHIKSAYESISHSDSLLFYSKLQLSILNSDHSRLIIIS
PGFGAGETILLREKAMLLAKQNDHLSGKVMYVESNTMKDAISSESTLTLR
KSGVMVEFMRPDLFRLILQNKSKAVFLDEYMINKDSDIYLLDQLAKYLEV
LWVVPSSESFLVNFKEKLETNFEILDVSLNFGDGKAEPEKKKFEGNPEIE
VFTEYQSNENKKKDDVKQMKKDISKVSKELNDAKSSAERTKNAVLEDSNA
VLESFMNTVIHMTSVLSLIKMPSKGDESTQNLSSFASQQFKDIDNQVKKN
QKEVDQLNNTIVNVSQNLASVDMRHQLHENTSFTGHMIWKIDNLEHRFTQ
AIIGRTTALHSAPCYITKYGYKFCARLYLTGDGLGKGTHASLYFVLMKSE
FDVLLEWPFKKHITFTLINQDNTERNIVETFNTDVNSSSFKRPTKQMNIA
SGCPYFAKQDKLRKPELGFVKDGCIYIDINVRNQAN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007230XLOC_007230Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012888TCONS_00012888Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002083MATH/TRAF_dom
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 616..643
NoneNo IPR availableCOILSCoilCoilcoord: 690..717
NoneNo IPR availableGENE3D1.20.5.50coord: 596..723
e-value: 0.0013
score: 17.9
IPR002083MATH/TRAF domainSMARTSM00061math_3coord: 743..862
e-value: 2.4E-8
score: 43.8
IPR002083MATH/TRAF domainPROSITEPS50144MATHcoord: 734..881
score: 14.536
IPR008974TRAF-likeGENE3D2.60.210.10coord: 724..883
e-value: 5.0E-31
score: 107.3
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 734..881

Blast
[Close]
BLAST of TCONS_00012888-protein vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 1.862e-47
Identity = 81/165 (49.09%), Postives = 116/165 (70.30%), Query Frame = 0 
Query:  718 LASVDMRHQLHENTSFTGHMIWKIDNLEHRFTQAIIGRTTALHSAPCYITKYGYKFCARLYLTGDGLGKGTHASLYFVLMKSEFDVLLEWPFKKHITFTLINQDNTERNIVETFNTDVNSSSFKRPTKQMNIASGCPYFAKQDKLRKPELG-FVKDGCIYIDINV 881
            LA +D+R Q+ E  S+ G +IWKI + + R  +A++G+T +L+S P Y   +GYK CAR+YL GDG+GKGTH SL+FV+M+ E+D LL WPFK+ +T  L++Q ++ R++ + F  D NSSSFK+PT +MNIASGCP F  Q  L   E G ++KD  I+I + V
Sbjct:  399 LADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVL---ENGTYIKDDTIFIKVIV 560
The following BLAST results are available for this feature:
BLAST of TCONS_00012888-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF31.862e-4749.09TNF receptor-associated factor 3 OS=Homo sapiens G... [more]
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