TCONS_00012884-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012884-protein
Unique NameTCONS_00012884-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length224

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012884-protein ID=TCONS_00012884-protein|Name=TCONS_00012884-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
MAVGKNKRLSKGKKGTKKKIIDPFAKKDWYDVKIPSNFNVRNIGKTPVTR
TIGTKIASDALKGRVFEMAQADLNNDEVSFRKYRLMVEDVQGRNVMTNFH
GMSMTTDKLRSLVKKWQTCIEAHTDVKTTDGYLLRFFAIGFTKKRNNSTK
KTAYAKSTQIRAIRKKMVEIMSREVTTKDLKDVVTKLLPDSMGADMEKSC
QSIYPLHDCYIRKVKVLKKPKFDD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007226XLOC_007226Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012884TCONS_00012884Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001593Ribosomal_S3Ae
IPR027500Ribosomal_S1/3_euk
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001593Ribosomal protein S3AeSMARTSM01397Ribosomal_S3Ae_2coord: 15..220
e-value: 1.1E-129
score: 446.8
IPR001593Ribosomal protein S3AePFAMPF01015Ribosomal_S3Aecoord: 15..220
e-value: 3.3E-93
score: 310.9
IPR02750040S ribosomal protein S1/3, eukaryotesHAMAPMF_03122Ribosomal_S3Ae_eukcoord: 1..223
score: 34.182

Blast
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BLAST of TCONS_00012884-protein vs. Swiss-Prot (Human)
Match: RS3A (40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2)

HSP 1 Score: 334.339 bits (856), Expect = 4.071e-117
Identity = 160/224 (71.43%), Postives = 193/224 (86.16%), Query Frame = 0 
Query:    1 MAVGKNKRLSKGKKGTKKK-IIDPFAKKDWYDVKIPSNFNVRNIGKTPVTRTIGTKIASDALKGRVFEMAQADLNNDEVSFRKYRLMVEDVQGRNVMTNFHGMSMTTDKLRSLVKKWQTCIEAHTDVKTTDGYLLRFFAIGFTKKRNNSTKKTAYAKSTQIRAIRKKMVEIMSREVTTKDLKDVVTKLLPDSMGADMEKSCQSIYPLHDCYIRKVKVLKKPKFD 223
            MAVGKNKRL+KG K   KK ++DPF+KKDWYDVK P+ FN+RNIGKT VTRT GTKIASD LKGRVFE++ ADL NDEV+FRK++L+ EDVQG+N +TNFHGM +T DK+ S+VKKWQT IEAH DVKTTDGYLLR F +GFTKKRNN  +KT+YA+  Q+R IRKKM+EIM+REV T DLK+VV KL+PDS+G D+EK+CQSIYPLHD ++RKVK+LKKPKF+
Sbjct:    1 MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFE 224
The following BLAST results are available for this feature:
BLAST of TCONS_00012884-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS3A4.071e-11771.4340S ribosomal protein S3a OS=Homo sapiens GN=RPS3A... [more]
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