TCONS_00012837-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012837-protein
Unique NameTCONS_00012837-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length451

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012837-protein ID=TCONS_00012837-protein|Name=TCONS_00012837-protein|organism=Clytia hemisphaerica|type=polypeptide|length=451bp
RTVKDKKQPDMSGQEQETDRNVEIWKIKKLIKSLQAARGNGTSMISLIIP
PKDQISRIAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPP
NGLVVYCGTIVTSEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALL
EDDSKFGFIIMDGNGALFGTLCGNTRDVLHKFTVDLPKKHGRGGQSALRF
ARLRMEKRHNYVRKVAETAVQMFISNDKINVAGLVIAGSADFKSELSQSD
MFDGRLQAKILKVVDVSYGGENGFNQAIELSAEVLSNVKFIQEKKLIGKY
FDEISQDTGRFCFGVDDTLKALEMGAVETLIVWENLETQRITLKNHSSDD
NNILLLNPEQEKDRTNFLDKETNVELEILDKMPLLEWLANNYKSFGAALE
IVTDRSQEGSQFCRGFGGIGGLLRYKVDFQSMDYDDLDDLDYYDDDDESL
F
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007198XLOC_007198Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012837TCONS_00012837Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005140eRF1_1_Pelota
IPR029064L30e-like
IPR004403Peptide_chain-rel_eRF1/aRF1
IPR005141eRF1_2
IPR024049Release_factor_eRF1/aRF1_N
IPR005142eRF1_3
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0016149translation release factor activity, codon specific
Vocabulary: Biological Process
TermDefinition
GO:0006415translational termination
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006415 translational termination
cellular_component GO:0005737 cytoplasm
molecular_function GO:0016149 translation release factor activity, codon specific
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005140eRF1 domain 1/Pelota-likeSMARTSM01194eRF1_1_2coord: 15..151
e-value: 4.2E-50
score: 182.4
IPR005140eRF1 domain 1/Pelota-likePFAMPF03463eRF1_1coord: 28..148
e-value: 5.3E-19
score: 68.4
IPR02906450S ribosomal protein L30e-likeGENE3D3.30.1330.30coord: 300..448
e-value: 8.4E-63
score: 210.5
IPR02906450S ribosomal protein L30e-likeSUPERFAMILY55315L30e-likecoord: 287..430
IPR004403Peptide chain release factor eRF1/aRF1TIGRFAMTIGR03676TIGR03676coord: 23..427
e-value: 2.4E-132
score: 439.5
IPR005141eRF1 domain 2PFAMPF03464eRF1_2coord: 155..287
e-value: 2.6E-46
score: 157.2
IPR024049Peptide Chain Release Factor eRF1/aRF1, N-terminalGENE3D3.30.960.10coord: 38..142
e-value: 3.6E-53
score: 177.7
IPR024049Peptide Chain Release Factor eRF1/aRF1, N-terminalSUPERFAMILY55481N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1coord: 17..152
NoneNo IPR availableGENE3D1.20.5.170coord: 279..299
e-value: 6.1E-20
score: 70.1
NoneNo IPR availableGENE3D3.30.420.60coord: 153..278
e-value: 4.1E-69
score: 230.6
NoneNo IPR availableSUPERFAMILY53137Translational machinery componentscoord: 153..285
IPR005142eRF1 domain 3PFAMPF03465eRF1_3coord: 290..427
e-value: 6.7E-39
score: 132.8

Blast
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BLAST of TCONS_00012837-protein vs. Swiss-Prot (Human)
Match: ERF1 (Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3)

HSP 1 Score: 749.969 bits (1935), Expect = 0.000e+0
Identity = 359/437 (82.15%), Postives = 397/437 (90.85%), Query Frame = 0 
Query:   11 MSGQEQETDRNVEIWKIKKLIKSLQAARGNGTSMISLIIPPKDQISRIAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTSEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLEDDSKFGFIIMDGNGALFGTLCGNTRDVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQMFISNDKINVAGLVIAGSADFKSELSQSDMFDGRLQAKILKVVDVSYGGENGFNQAIELSAEVLSNVKFIQEKKLIGKYFDEISQDTGRFCFGVDDTLKALEMGAVETLIVWENLETQRITLKNHSSDDNNILLLNPEQEKDRTNFLDKETNVELEILDKMPLLEWLANNYKSFGAALEIVTDRSQEGSQFCRGFGGIGGLLRYKVDFQSMDYDDLDDLDYYDDDD 447
            M+      DRNVEIWKIKKLIKSL+AARGNGTSMISLIIPPKDQISR+AKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVT EGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALL DDSKFGFI++DG+GALFGTL GNTR+VLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQ+FIS DK+NVAGLV+AGSADFK+ELSQSDMFD RLQ+K+LK+VD+SYGGENGFNQAIELS EVLSNVKFIQEKKLIG+YFDEISQDTG++CFGV+DTLKALEMGAVE LIV+ENL+  R  L    +++  IL L PEQEKD+++F DKET  E E+++ MPLLEW ANNYK FGA LEIVTD+SQEGSQF +GFGGIGG+LRY+VDFQ M+Y   DD +++D DD
Sbjct:    1 MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDD-EFFDLDD 436
The following BLAST results are available for this feature:
BLAST of TCONS_00012837-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ERF10.000e+082.15Eukaryotic peptide chain release factor subunit 1 ... [more]
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