TCONS_00012815-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012815-protein
Unique NameTCONS_00012815-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length172

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012815-protein ID=TCONS_00012815-protein|Name=TCONS_00012815-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MAAPEDNDHLIPETGAVFTFGRSRFADNLANKFWIKNDKCVKIACGDQHS
AVVTERGRVYVFGNNEWGQLGLGHTKASNKPSFIKVLKPEKCLSVSCGRS
HTLLYTQSGKLFSLGGNEDGQLGHGDRNNETSPKQVEELESVKLKEISCG
ANHSXDFSCMETHHLGGFPDLI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007194XLOC_007194Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012815TCONS_00012815Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000408Reg_chr_condens
IPR009091RCC1/BLIP-II
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000408Regulator of chromosome condensation, RCC1PRINTSPR00633RCCNDNSATIONcoord: 111..127
score: 33.33
coord: 58..74
score: 46.08
coord: 92..105
score: 23.81
IPR000408Regulator of chromosome condensation, RCC1PFAMPF00415RCC1coord: 57..104
e-value: 3.6E-14
score: 53.0
coord: 108..154
e-value: 1.7E-13
score: 50.9
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS00626RCC1_2coord: 43..53
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 109..160
score: 13.72
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 57..108
score: 15.248
NoneNo IPR availableGENE3D2.130.10.30coord: 6..155
e-value: 1.8E-43
score: 148.2
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IISUPERFAMILY50985RCC1/BLIP-IIcoord: 13..154

Blast
[Close]
BLAST of TCONS_00012815-protein vs. Swiss-Prot (Human)
Match: RPGR (X-linked retinitis pigmentosa GTPase regulator OS=Homo sapiens GN=RPGR PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 3.299e-44
Identity = 76/155 (49.03%), Postives = 107/155 (69.03%), Query Frame = 0 
Query:    1 MAAPEDNDHLIPETGAVFTFGRSRFADNLANKFWIKNDKCVKIACGDQHSAVVTERGRVYVFGNNEWGQLGLGHTKASNKPSFIKVLKPEKCLSVSCGRSHTLLYTQSGKLFSLGGNEDGQLGHGDRNNETSPKQVEELESV-KLKEISCGANHS 154
            M  PE+   L+P++GAVFTFG+S+FA+N   KFW KND  V ++CGD+HSAVVT   ++Y+FG+N WGQLGLG   A +KP+ +K LKPEK    +CGR+HTL+ T+ G +++ GGN +GQLG GD     +   +    S  K+K++S G+N S
Sbjct:    1 MREPEE---LMPDSGAVFTFGKSKFAENNPGKFWFKNDVPVHLSCGDEHSAVVTGNNKLYMFGSNNWGQLGLGSKSAISKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNNEGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSNTS 152
The following BLAST results are available for this feature:
BLAST of TCONS_00012815-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPGR3.299e-4449.03X-linked retinitis pigmentosa GTPase regulator OS=... [more]
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