TCONS_00012686-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012686-protein
Unique NameTCONS_00012686-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length207

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012686-protein ID=TCONS_00012686-protein|Name=TCONS_00012686-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
XQPAPSSGDKKNEKAKASNENKKDKKKANKENKAPKAAAEGAKPIDVSRL
NLKIGKIIDVKRHPDADGLFMETVEFGEEKPRTILSGLVKHYTLEQMKDR
TAIFLCNLKPQKMRGIASEGMIMCASTPEKVEIITPPEGAAIGDRVICPQ
FAGEPDGQLNPKKKIWEQVAPDLAVDDEGFASYKGNSLVIEGKGKCKAPT
MTKCPIK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007126XLOC_007126Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012686TCONS_00012686Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002547tRNA-bd_dom
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0000049tRNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0000049 tRNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 12..32
NoneNo IPR availableGENE3D2.40.50.140coord: 45..207
e-value: 7.2E-57
score: 191.4
NoneNo IPR availableCDDcd02799tRNA_bind_EMAP-II_likecoord: 45..147
e-value: 2.23862E-54
score: 170.102
IPR002547tRNA-binding domainPFAMPF01588tRNA_bindcoord: 52..144
e-value: 6.4E-29
score: 99.8
IPR002547tRNA-binding domainPROSITEPS50886TRBDcoord: 46..147
score: 30.577
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 46..199

Blast
[Close]
BLAST of TCONS_00012686-protein vs. Swiss-Prot (Human)
Match: AIMP1 (Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Homo sapiens GN=AIMP1 PE=1 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 1.301e-70
Identity = 98/171 (57.31%), Postives = 127/171 (74.27%), Query Frame = 0 
Query:   37 AAAEGAKPIDVSRLNLKIGKIIDVKRHPDADGLFMETVEFGEEKPRTILSGLVKHYTLEQMKDRTAIFLCNLKPQKMRGIASEGMIMCASTPEKVEIITPPEGAAIGDRVICPQFAGEPDGQLNPKKKIWEQVAPDLAVDDEGFASYKGNSLVIEGKGKCKAPTMTKCPIK 207
            A +  +KPIDVSRL+L+IG II  ++HPDAD L++E V+ GE  PRT++SGLV H  LEQM++R  I LCNLKP KMRG+ S+ M+MCAS+PEK+EI+ PP G+  GDR+    F GEPD +LNPKKKIWEQ+ PDL  +DE  A+YKG    ++GKG C+A TM+   IK
Sbjct:  142 AGSADSKPIDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGIK 312
The following BLAST results are available for this feature:
BLAST of TCONS_00012686-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AIMP11.301e-7057.31Aminoacyl tRNA synthase complex-interacting multif... [more]
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