TCONS_00012678-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012678-protein
Unique NameTCONS_00012678-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length352

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012678-protein ID=TCONS_00012678-protein|Name=TCONS_00012678-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
MEMIQQKVIIFATFIHLIIAGKTFNNFGQQVPQETPFNIVDVHHGQQRCF
SICTYSQRCMAFLIKTKPDGSGGFICQFYDRSVRMLNMAISSVTGVTFYS
IYVNLNSCADYYKAGYRKNDLYEVKFSNGTMGHAQCYLEYKDCWDWQHNH
QHGDVYVTREIALPSRLVKVRCFGSWTLLQKRTKAGGTVDFQRTWQEYKQ
GFGKMEENEFWLGNQIIHEMTNRGIGYKIYIWAKNFDGAKGHASYTNFRV
GPESDSYRLECATAPTFGQNALYNGNRFTTFDRDNDQFQSGNCAAYQDLS
GGFWYSSCGGFYPNGQYIPYKDPSKINGIVWNAWINKQENLQNMEIRIDR
MS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007122XLOC_007122Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012678TCONS_00012678Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
IPR014715Fibrinogen_a/b/g_C_2
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002181Fibrinogen, alpha/beta/gamma chain, C-terminal globular domainSMARTSM00186FBG_2coord: 138..351
e-value: 3.9E-24
score: 96.2
IPR002181Fibrinogen, alpha/beta/gamma chain, C-terminal globular domainPFAMPF00147Fibrinogen_Ccoord: 174..348
e-value: 2.6E-36
score: 125.4
IPR002181Fibrinogen, alpha/beta/gamma chain, C-terminal globular domainPROSITEPS51406FIBRINOGEN_C_2coord: 134..352
score: 33.848
IPR002181Fibrinogen, alpha/beta/gamma chain, C-terminal globular domainSUPERFAMILY56496Fibrinogen C-terminal domain-likecoord: 138..348
IPR014716Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1GENE3D3.90.215.10coord: 83..279
e-value: 2.1E-32
score: 112.1
IPR014715Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 2GENE3D4.10.530.10coord: 280..342
e-value: 9.0E-16
score: 57.3

Blast
[Close]
BLAST of TCONS_00012678-protein vs. Swiss-Prot (Human)
Match: FIBA (Fibrinogen alpha chain OS=Homo sapiens GN=FGA PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.677e-28
Identity = 84/248 (33.87%), Postives = 132/248 (53.23%), Query Frame = 0 
Query:  132 GHAQCYLEYKDCWDWQHNHQHGDVYVTREIALP--SRLVKVRC-----FGSWTLLQKRTKAGGTVDFQRTWQEYKQGFGKME---ENEFWLGNQIIHEMTNRGIGYKIYIWAKNFDGAKGHASYTNFRVGPESDSYRLECATAPTFGQNALYNGN-------------RFTTFDRDNDQFQSGNCAAYQDLSGGFWYSSC------GGFYPNGQYIPYKD-PSKI-NGIVWNAWINKQENLQNMEIRI 348
            GHA+     +DC D    H  G       I LP  S++  V C      G W L+Q+R    G+++F RTWQ+YK+GFG +    E EFWLGN  +H +T RG   ++ +  +++ G + +A Y +FRVG E++ Y L+ ++      +AL  G+             +F+TFDRD DQ++  NCA      GG+WY++C      G +YP G Y P  + P +I NG+VW ++     +L+ + ++I
Sbjct:  622 GHAKSR-PVRDCDDVLQTHPSGTQSGIFNIKLPGSSKIFSVYCDQETSLGGWLLIQQRMD--GSLNFNRTWQDYKRGFGSLNDEGEGEFWLGNDYLHLLTQRGSVLRVEL--EDWAGNEAYAEY-HFRVGSEAEGYALQVSSYEGTAGDALIEGSVEEGAEYTSHNNMQFSTFDRDADQWEE-NCAEV--YGGGWWYNNCQAANLNGIYYPGGSYDPRNNSPYEIENGVVWVSFRGADYSLRAVRMKI 860
The following BLAST results are available for this feature:
BLAST of TCONS_00012678-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FIBA1.677e-2833.87Fibrinogen alpha chain OS=Homo sapiens GN=FGA PE=1... [more]
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