TCONS_00012599-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012599-protein
Unique NameTCONS_00012599-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length351

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012599-protein ID=TCONS_00012599-protein|Name=TCONS_00012599-protein|organism=Clytia hemisphaerica|type=polypeptide|length=351bp
MVLVEMNGKVQIQQGHCDSNSSDEETESTESRFCVACQSVITERFFLQIN
EKFWHEECLTCCVCNIGLKDVCFYKDGRIFCRSDYTRIHGCKCSGCDVFI
SPNELVMKALQNVYHVDCFKCSECGDKLEKGDEFILKDSKLYCSADFNVA
DPKFDIGDVFDSDDYDSMSTISAASPNGQDKLRNSQSNCKRPRTILTSQQ
REDFKAAFELTPKPCRKVREQLSNETGLSVRVVQVWFQNQRAKLKKIQKK
TDGTTEPATEKIKKTIQGKVTKKKRSKSISSVKSESSAGSSEYNINTNIK
TETSESFQSILDSYSTMHQMLTDTSPKDMDTNNNTITINTTNXQHHASDV
D
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007074XLOC_007074Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012599TCONS_00012599Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 92..146
e-value: 1.4E-17
score: 74.4
coord: 33..84
e-value: 3.0E-11
score: 53.4
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 34..87
e-value: 4.5E-11
score: 42.7
coord: 93..147
e-value: 3.6E-17
score: 62.2
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 34..68
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 93..128
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 91..153
score: 13.573
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 32..90
score: 10.653
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 189..251
e-value: 1.1E-20
score: 84.8
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 190..246
e-value: 4.9E-18
score: 64.6
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 187..247
score: 16.827
NoneNo IPR availableGENE3D1.10.10.60coord: 181..257
e-value: 2.8E-20
score: 71.3
NoneNo IPR availableGENE3D2.10.110.10coord: 26..93
e-value: 7.8E-13
score: 47.7
NoneNo IPR availableGENE3D2.10.110.10coord: 94..151
e-value: 1.3E-16
score: 60.0
NoneNo IPR availableCDDcd00086homeodomaincoord: 190..248
e-value: 3.58572E-19
score: 78.8244
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 61..124
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 28..59
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 222..245
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 170..249

Blast
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BLAST of TCONS_00012599-protein vs. Swiss-Prot (Human)
Match: LMX1A (LIM homeobox transcription factor 1-alpha OS=Homo sapiens GN=LMX1A PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 2.578e-71
Identity = 106/221 (47.96%), Postives = 145/221 (65.61%), Query Frame = 0 
Query:   34 CVACQSVITERFFLQINEKFWHEECLTCCVCNIGLKDVCFYKDGRIFCRSDYTRIHGCKCSGCDVFISPNELVMKALQNVYHVDCFKCSECGDKLEKGDEFILKDSKLYCSADF-------NVADPKFDIGDVFDSDDYDSMSTISAASPNGQDKLRNSQSNCKRPRTILTSQQREDFKAAFELTPKPCRKVREQLSNETGLSVRVVQVWFQNQRAKLKKI 247
            C  CQ VI +RF L++N+ FWHE+C+ C  C   L+  CFY+D +++C+ DY ++   KC GC   I+PNE VM+A ++VYH+ CF C  C  +L+KGDEF+LK+ +L C  D+       ++  P     D   SDD +S+   +  +  G  +        KRPRTILT+QQR  FKA+FE++ KPCRKVRE L+ ETGLSVRVVQVWFQNQRAK+KK+
Sbjct:   35 CEGCQRVILDRFLLRLNDSFWHEQCVQCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVSPA--ASDSGKSDDEESLCKSAHGAGKGTAEEGKDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
The following BLAST results are available for this feature:
BLAST of TCONS_00012599-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LMX1A2.578e-7147.96LIM homeobox transcription factor 1-alpha OS=Homo ... [more]
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