TCONS_00012575-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012575-protein
Unique NameTCONS_00012575-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length785

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012575-protein ID=TCONS_00012575-protein|Name=TCONS_00012575-protein|organism=Clytia hemisphaerica|type=polypeptide|length=785bp
MQSEPPLPPPVMRDGPPPPPSVKRSEPPQLLPSVIHCGLPPPPPSVIRSR
PPPPPPSAMQSEPPLPPPVMRDGPPPPPSVKRSEPPQLLPSVIHCGLPPP
PPSVIRSRPPPPPSSAMQSEPPLPPPVMRDGPPPPPSVKRSEPPQLLPSV
IHCGLPPPPPSVIRSRPPPPPPSAMQSEPPLPPPVMRDGPPPPPSVKRSE
PPHPPPSVIHYGPPPPPPSVIRSGPSSSRSAIRSGPPHLSPSAIRSGPPP
PPPSVIRSGPPPPPPSSSAIRSRPPHPPPSAMQSEPPLPPPVMRDGPPPP
PSVKRSEPPHPPPSVIHYGPPPPPPSVIRSGPSSSRSAIRSGPPHLSPSA
IRSGPPPPPPSVIRNGPPPPPPPSAIRSGPPHLSPSAIRSGPPPPPPSVI
RNGPPPPPPPSAIRSGPPPPPPSAIRNGPPPPPSLIRSGPPPPPTLAMHS
EPPLPPSAIRSGPPPPPPSVIRSGASTPPSATRSEPPPSRSVTRSGPPPH
PSAKRSEPPPSRSVTHSGPPPPPSATRSEPPPSRSVTRSRPPPPPSVIRS
GPPPPPSAIHSGTPPATSTNKFFEPPPGVSWLSKRSNMFQPTKREPPAPD
NLKSSSGDWRVKLKSWTVEDVCDWLKDISLEEYCELFRFHAIDGVELLEQ
NEESLVDALKIERIGHRRKIMRNLTKLLEKEKEEKRTKEKEEETPDEFLC
PITXEKKETKEKEEETPDEFLCPITQELMTDPVIVADGYTYERTSITQWF
ETGNNRSPMTNLPLENRNLVPNRSLKDAINRHLGQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007053XLOC_007053Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012575TCONS_00012575Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001660SAM
IPR003613Ubox_domain
IPR013083Znf_RING/FYVE/PHD
IPR013761SAM/pointed
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0004842ubiquitin-protein transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0016567protein ubiquitination
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
molecular_function GO:0005515 protein binding
molecular_function GO:0004842 ubiquitin-protein transferase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 671..694
NoneNo IPR availableGENE3D1.10.150.50coord: 610..689
e-value: 3.1E-20
score: 71.7
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 708..783
IPR001660Sterile alpha motif domainSMARTSM00454SAM_4coord: 613..680
e-value: 1.9E-18
score: 77.3
IPR001660Sterile alpha motif domainPFAMPF07647SAM_2coord: 614..674
e-value: 1.0E-16
score: 60.6
IPR001660Sterile alpha motif domainPROSITEPS50105SAM_DOMAINcoord: 616..680
score: 16.762
IPR003613U box domainSMARTSM00504Ubox_2coord: 719..782
e-value: 1.1E-24
score: 98.0
IPR003613U box domainPFAMPF04564U-boxcoord: 717..783
e-value: 8.0E-22
score: 77.1
IPR003613U box domainPROSITEPS51698U_BOXcoord: 715..785
score: 38.472
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 715..785
e-value: 1.6E-12
score: 46.6
IPR013761Sterile alpha motif/pointed domainSUPERFAMILY47769SAM/Pointed domaincoord: 610..678

Blast
[Close]
BLAST of TCONS_00012575-protein vs. Swiss-Prot (Human)
Match: WSDU1 (WD repeat, SAM and U-box domain-containing protein 1 OS=Homo sapiens GN=WDSUB1 PE=1 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 3.300e-29
Identity = 71/168 (42.26%), Postives = 92/168 (54.76%), Query Frame = 0 
Query:  616 WTVEDVCDWLKDISLEEYCELFRFHAIDGVELLEQNEESLVDALKIERIGHRRKIMRNLTKLLEKEKEEKRTKEKEEETPDEFLCPITXEKKETKEKEEETPDEFLCPITQELMTDPVIVADGYTYERTSITQWFETGNNRSPMTNLPLENRNLVPNRSLKDAINRHL 783
            W+ EDV  WL    L++   +F+ + IDG ELL   +ESL D LKIE +G R K++R +        EE RTK K   +                      PDEF+CPIT+ELM DPVI +DGY+YE+ ++  W       SPMTNL L +  L PNR+LK AINR L
Sbjct:  332 WSEEDVSTWLCAQDLKDLVGIFKMNNIDGKELLNLTKESLADDLKIESLGLRSKVLRKI--------EELRTKVKSLSSG--------------------IPDEFICPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSAVLTPNRTLKMAINRWL 471
The following BLAST results are available for this feature:
BLAST of TCONS_00012575-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WSDU13.300e-2942.26WD repeat, SAM and U-box domain-containing protein... [more]
back to top