TCONS_00012523-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012523-protein
Unique NameTCONS_00012523-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length222

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012523-protein ID=TCONS_00012523-protein|Name=TCONS_00012523-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
MLSTVARNTRRALSKQALQSVQVASKHTLPALDYEYSSLQPIISEEIMTL
HHSKHHQTYVNNLNAAEEQLQDALSQGDLPKVIGLQPALRFNGGGHINHT
IFWTNLSPNGGGEPKGDLLAAIVRDFGSFANMKEQLTNATVAVQGSGWGW
LGYDKKTSMLTIDAMANQDPLQSTTGRIPLLGIDVWEHAYYLQYKNVRPD
YVKAIFDIVNWSNVSERYENAM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007033XLOC_007033Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012523TCONS_00012523Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001189Mn/Fe_SOD
IPR019831Mn/Fe_SOD_N
IPR019832Mn/Fe_SOD_C
IPR019833Mn/Fe_SOD_BS
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0004784superoxide dismutase activity
Vocabulary: Biological Process
TermDefinition
GO:0006801superoxide metabolic process
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006801 superoxide metabolic process
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004784 superoxide dismutase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 56..76
NoneNo IPR availableGENE3D1.10.287.990coord: 44..107
e-value: 3.1E-24
score: 85.0
IPR001189Manganese/iron superoxide dismutasePRINTSPR01703MNSODISMTASEcoord: 143..151
score: 71.31
coord: 30..41
score: 47.11
coord: 90..103
score: 60.8
coord: 51..64
score: 71.64
coord: 182..194
score: 80.5
IPR001189Manganese/iron superoxide dismutasePIRSFPIRSF000349MnSOD_FeSODcoord: 2..222
e-value: 6.1E-78
score: 259.2
IPR019831Manganese/iron superoxide dismutase, N-terminalPFAMPF00081Sod_Fe_Ncoord: 26..107
e-value: 1.4E-30
score: 105.4
IPR019831Manganese/iron superoxide dismutase, N-terminalSUPERFAMILY46609Fe,Mn superoxide dismutase (SOD), N-terminal domaincoord: 24..112
IPR019832Manganese/iron superoxide dismutase, C-terminalPFAMPF02777Sod_Fe_Ccoord: 114..217
e-value: 3.7E-36
score: 123.3
IPR019832Manganese/iron superoxide dismutase, C-terminalSUPERFAMILY54719Fe,Mn superoxide dismutase (SOD), C-terminal domaincoord: 109..221
IPR019833Manganese/iron superoxide dismutase, binding sitePROSITEPS00088SOD_MNcoord: 184..191

Blast
[Close]
BLAST of TCONS_00012523-protein vs. Swiss-Prot (Human)
Match: SODM (Superoxide dismutase [Mn], mitochondrial OS=Homo sapiens GN=SOD2 PE=1 SV=2)

HSP 1 Score: 306.22 bits (783), Expect = 9.604e-107
Identity = 144/218 (66.06%), Postives = 171/218 (78.44%), Query Frame = 0 
Query:    1 MLSTVARNTRRALSKQALQSVQVASKHTLPALDYEYSSLQPIISEEIMTLHHSKHHQTYVNNLNAAEEQLQDALSQGDLPKVIGLQPALRFNGGGHINHTIFWTNLSPNGGGEPKGDLLAAIVRDFGSFANMKEQLTNATVAVQGSGWGWLGYDKKTSMLTIDAMANQDPLQSTTGRIPLLGIDVWEHAYYLQYKNVRPDYVKAIFDIVNWSNVSERY 218
            MLS     T R L+  AL  +    KH+LP L Y+Y +L+P I+ +IM LHHSKHH  YVNNLN  EE+ Q+AL++GD+   I LQPAL+FNGGGHINH+IFWTNLSPNGGGEPKG+LL AI RDFGSF   KE+LT A+V VQGSGWGWLG++K+   L I A  NQDPLQ TTG IPLLGIDVWEHAYYLQYKNVRPDY+KAI++++NW NV+ERY
Sbjct:    1 MLSRAVCGTSRQLAP-ALGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217
The following BLAST results are available for this feature:
BLAST of TCONS_00012523-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SODM9.604e-10766.06Superoxide dismutase [Mn], mitochondrial OS=Homo s... [more]
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