TCONS_00012436-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012436-protein
Unique NameTCONS_00012436-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length591

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012436-protein ID=TCONS_00012436-protein|Name=TCONS_00012436-protein|organism=Clytia hemisphaerica|type=polypeptide|length=591bp
MMNHGIETETPSIAGNVPAFLVKLWRIVGDESLDSIISWSQNGQTFKVHD
QTAFAKDILPKYYKHSNFSSFVRQVNMYGFRKIVDAQSGSLRHDKDEWEF
FHQSFQQNKPELLAEIKRKASNKESDAKSNQISSLLTEVERLKLQHETVA
SKLENMKSENEMLWAEVGDLRDQHRDQQTVINKLIQVFVKIVMSNKKDRG
GNKRRALDFPAALDNKHAKMTQDLLPYSSSTNQNIYPSLSPDRMYSVESP
GSPYPITEVPTPTNASHFDNSMISVIDDSPMPLVEEIDNSSSTTNPISNI
SFPSNGKQPLVVKSEGKTITIVPNQPSAVSNMQMTAPQMKSESDFAFPEK
YNGLSATSKCLNTDMSQMGFEVIKCMSKDNPSNHCSGVSSGDCSVIPADE
DIITVVPNVSTSSSEPFLSTPDTLLPPALNNTPRKHALPQKFQQQKEAHP
VTSEMSLVPVAPILKMPPSGRLYSRQRSYKDKQELNENVQNIGRSIEMLQ
GLLESQPVNIDVKSLNLDFLPENMTIQDVAKLVESGGANLTVNAITEGPN
QNNKDDSSPVSPSAYIDPQFEMSSQDFFDSVLDNQSSSSAT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006984XLOC_006984Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012436TCONS_00012436Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000232HSF_DNA-bd
IPR011991WHTH_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 139..159
NoneNo IPR availableGENE3D1.20.5.1000coord: 105..188
e-value: 6.3E-5
score: 22.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 543..566
NoneNo IPR availableCDDcd14686bZIPcoord: 116..173
e-value: 0.00698665
score: 34.0581
IPR000232Heat shock factor (HSF)-type, DNA-bindingPRINTSPR00056HSFDOMAINcoord: 20..43
score: 44.64
coord: 58..70
score: 67.69
coord: 71..83
score: 77.36
IPR000232Heat shock factor (HSF)-type, DNA-bindingSMARTSM00415hsfneu3coord: 16..119
e-value: 2.4E-51
score: 186.6
IPR000232Heat shock factor (HSF)-type, DNA-bindingPFAMPF00447HSF_DNA-bindcoord: 20..119
e-value: 2.8E-30
score: 104.7
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 14..104
e-value: 1.5E-40
score: 137.2
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 16..119

Blast
[Close]
BLAST of TCONS_00012436-protein vs. Swiss-Prot (Human)
Match: HSF1 (Heat shock factor protein 1 OS=Homo sapiens GN=HSF1 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 2.431e-53
Identity = 95/195 (48.72%), Postives = 129/195 (66.15%), Query Frame = 0 
Query:   11 PSIAG--NVPAFLVKLWRIVGDESLDSIISWSQNGQTFKVHDQTAFAKDILPKYYKHSNFSSFVRQVNMYGFRKIVDAQSGSL-RHDKDEWEFFHQSFQQNKPELLAEIKRKASN----KESDAKSNQ--ISSLLTEVERLKLQHETVASKLENMKSENEMLWAEVGDLRDQHRDQQTVINKLIQVFVKIVMSNK 196
            P  AG  NVPAFL KLW +V D   D++I WS +G +F V DQ  FAK++LPKY+KH+N +SFVRQ+NMYGFRK+V  + G L + ++D+ EF H  F + + +LL  IKRK ++    K  D K  Q  ++ LLT+V+ +K + E + SKL  MK ENE LW EV  LR +H  QQ V+NKLIQ  + +V SN+
Sbjct:    7 PGAAGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVSTLKSEDIKIRQDSVTKLLTDVQLMKGKQECMDSKLLAMKHENEALWREVASLRQKHAQQQKVVNKLIQFLISLVQSNR 201
The following BLAST results are available for this feature:
BLAST of TCONS_00012436-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HSF12.431e-5348.72Heat shock factor protein 1 OS=Homo sapiens GN=HSF... [more]
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