TCONS_00012185-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012185-protein
Unique NameTCONS_00012185-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length335

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012185-protein ID=TCONS_00012185-protein|Name=TCONS_00012185-protein|organism=Clytia hemisphaerica|type=polypeptide|length=335bp
MKFSVWPFLLVIGVVFGSLHSILINLGKDVNGKIPFHSASVAFCIEFAKI
TTSLTLLFIEWLSSTSSTNQQHSTNHLPRTAIFLFMVPALLYAVVNNLVT
HAQKFMDPASFQLLNNLKIVSTAFLYKLIIKKEITSRKWMAIFLLFIGGS
VNSMRGLVKTEERNTNELKSYITTNGLLLVLIYCGASSLAGVYTEAVLKK
YRTTSINLQNSVLYTFGLLANVCVFLFSSNDQNKPITITGFFDGFSIYTW
LIVLTQALNGLLISLIMKYLSNIVRLFMIASSMLLTTLLSSVIFGYKPDI
YFALAFLLVIFALYIYHFDGSQSGIKTNKKTVKDI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006858XLOC_006858Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012185TCONS_00012185Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007271Nuc_sug_transpt
Vocabulary: Cellular Component
TermDefinition
GO:0000139Golgi membrane
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0008643carbohydrate transport
Vocabulary: Molecular Function
TermDefinition
GO:0005351sugar:proton symporter activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008643 carbohydrate transport
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005351 sugar:proton symporter activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007271Nucleotide-sugar transporterPIRSFPIRSF005799UDP-gal_transptcoord: 1..334
e-value: 1.8E-76
score: 255.0
IPR007271Nucleotide-sugar transporterPFAMPF04142Nuc_sug_transpcoord: 14..316
e-value: 3.4E-48
score: 164.3
NoneNo IPR availableTIGRFAMTIGR00803TIGR00803coord: 87..316
e-value: 1.4E-22
score: 78.5
NoneNo IPR availableSUPERFAMILY103481Multidrug resistance efflux transporter EmrEcoord: 77..156

Blast
[Close]
BLAST of TCONS_00012185-protein vs. Swiss-Prot (Human)
Match: S35A4 (Probable UDP-sugar transporter protein SLC35A4 OS=Homo sapiens GN=SLC35A4 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.284e-33
Identity = 108/320 (33.75%), Postives = 175/320 (54.69%), Query Frame = 0 
Query:    6 WPFLLVIGVVFGSLHSILINLGKDVNGKIPFHSASVAFCIEFAKITTSLTLLFIEWLSSTSSTNQQHSTNHLPRTAIFLFMVPALLYAVVNNLVTHAQKFMDPASFQLLNNLKIVSTAFLYKLIIKKEITSRKWMAIFLLFIGGSVNSMRGL--------VKTEERNTNELKSYITTNGLLLVLIYCGASSLAGVYTEAVLKKYRTTSINLQNSVLYTFGLLANVCVFLFSSNDQNKPITITGFFDGFSIYTWLIVLTQALNGLLISLIMKYLSNIVRLFMIASSMLLTTLLSSVIFGYKPDIYFALAFLLVIFALYIYH 317
            W  +L++       H+ L+ L   V+G++PF  +S     E  K+      L + W        Q       P      F + ALLY   NNLV + Q++MDP+++Q+L+NLKI STA LY L ++  ++ R+ +A+ LL   G+  +  GL                + +  +IT  GLLL+++YC  S L+ VYTE ++K+ R   + LQN  LYTFG+L N+ +    +   + P    G  +GFS +  L+VL+QALNGLL+S +MK+ S+I RLF+++ S+++  +LS+V+   +    F LA LL+  A+ +Y+
Sbjct:   19 WTLMLLLSTAMYGAHAPLLAL-CHVDGRVPFRPSSAVLLTELTKLLLCAFSLLVGW--------QAWPQGPPPWRQAAPFALSALLYGANNNLVIYLQRYMDPSTYQVLSNLKIGSTAVLYCLCLRHRLSVRQGLALLLLMAAGACYAAGGLQVPGNTLPSPPPAAAASPMPLHITPLGLLLLILYCLISGLSSVYTELLMKRQRLP-LALQNLFLYTFGVLLNLGLH---AGGGSGP----GLLEGFSGWAALVVLSQALNGLLMSAVMKHGSSITRLFVVSCSLVVNAVLSAVLLRLQLTAAFFLATLLIGLAMRLYY 321
The following BLAST results are available for this feature:
BLAST of TCONS_00012185-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S35A42.284e-3333.75Probable UDP-sugar transporter protein SLC35A4 OS=... [more]
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