TCONS_00012027-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012027-protein
Unique NameTCONS_00012027-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012027-protein ID=TCONS_00012027-protein|Name=TCONS_00012027-protein|organism=Clytia hemisphaerica|type=polypeptide|length=371bp
MSTVESQSYGPASQTLTFLETEEADFGADTQGSEFEFNEFTLPSQTQTQS
QASQLDQASQPLINGFPENSTTISLRKGGQEHELLIRKHDNKEKKEEPNK
DKEEETATKAITKGVEELNFEDDEEESFADKELPPHACRYCGIHDPASVV
FDNTDKKWFCNGRGNTSGSHIINHLVRTKHKEVSLHKDGPLGETQLECYN
CGCRNVFLLGFIPAKADSVVVLLCRQPCAQQSNKQDTNWDQSQWQPLIND
RCFLSWLVKVPSEQEQLRARQISAVQINKLEELWKENPEAVLEDLEKPGV
DEEPSTVLLRYEDAYQYQNIFGPLVNHEAEYDKKLKESQVKEQPIFVYFN
CSDFVPSPYFKKSLFKKSDFQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006759XLOC_006759Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012027TCONS_00012027Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018999RNA-helicase_UPF1_UPF2-interct
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0008270zinc ion binding
GO:0004386helicase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
cellular_component GO:0005737 cytoplasm
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018999RNA helicase UPF1, UPF2-interacting domainPFAMPF09416UPF1_Zn_bindcoord: 136..287
e-value: 2.1E-73
score: 245.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..107

Blast
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BLAST of TCONS_00012027-protein vs. Swiss-Prot (Human)
Match: RENT1 (Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1 SV=2)

HSP 1 Score: 457.988 bits (1177), Expect = 1.991e-152
Identity = 226/337 (67.06%), Postives = 257/337 (76.26%), Query Frame = 0 
Query:    7 QSYGPASQTLTFLETEEADF-GADTQGSEFEFNEFTLPSQTQTQSQASQLDQASQPLINGFPENSTTISLRKGGQEHELLIRKHDNKEKKEEPNKDKEEETATKAITKGVEELNFEDDEEESFADKELPPHACRYCGIHDPASVVFDNTDKKWFCNGRGNTSGSHIINHLVRTKHKEVSLHKDGPLGETQLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCAQQSNKQDTNWDQSQWQPLINDRCFLSWLVKVPSEQEQLRARQISAVQINKLEELWKENPEAVLEDLEKPGVDEEPSTVLLRYEDAYQYQNIFGPLVNHEAEYDKKLKESQVKE 342
            ++YGP+SQTLTFL+TEEA+  GADTQGSEFEF +FTLPSQTQT                         +   GG        + D +   E   ++   + +    ++ + ELNFE+DEE+++  K+LP HAC YCGIHDPA VV+ NT KKWFCNGRGNTSGSHI+NHLVR K KEV+LHKDGPLGET LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCA QS+ +D NWD SQWQPLI DRCFLSWLVK+PSEQEQLRARQI+A QINKLEELWKENP A LEDLEKPGVDEEP  VLLRYEDAYQYQNIFGPLV  EA+YDKKLKESQ ++
Sbjct:    4 EAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPG-------------GPGGGGAGGPGGAGAGAAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPIHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQD 327
The following BLAST results are available for this feature:
BLAST of TCONS_00012027-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RENT11.991e-15267.06Regulator of nonsense transcripts 1 OS=Homo sapien... [more]
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